alsData |
Amyotrophic Lateral Sclerosis (ALS) dataset |
ancestors |
Node ancestry utilities |
ancestry |
Node ancestry utilities |
clusterGraph |
Topological graph clustering |
clusterScore |
Module scoring |
colorGraph |
Vertex and edge graph coloring on the base of fitting |
cplot |
Subgraph mapping |
dagitty2graph |
Graph conversion from dagitty to igraph |
descendants |
Node ancestry utilities |
extractClusters |
Cluster extraction utility |
factor.analysis |
Factor analysis for high dimensional data |
gplot |
Graph plotting with renderGraph |
graph2dag |
Convert directed graphs to directed acyclic graphs (DAGs) |
graph2dagitty |
Graph conversion from igraph to dagitty |
graph2lavaan |
Graph to lavaan model |
kegg |
KEGG interactome |
kegg.pathways |
KEGG pathways |
lavaan2graph |
lavaan model to graph |
localCI.test |
Conditional Independence (CI) local tests of an acyclic graph |
mergeNodes |
Graph nodes merging by a membership attribute |
modelSearch |
Optimal model search strategies |
orientEdges |
Assign edge orientation of an undirected graph |
pairwiseMatrix |
Pairwise plotting of multivariate data |
parameterEstimates |
Parameter Estimates of a fitted SEM |
parents |
Node ancestry utilities |
pathFinder |
Perturbed path search utility |
properties |
Graph properties summary and graph decomposition |
resizeGraph |
Interactome-assisted graph re-seizing |
sachs |
Sachs multiparameter flow cytometry data and consensus model |
SEMace |
Compute the Average Causal Effect (ACE) for a given source-sink pair |
SEMbap |
Bow-free covariance search and data de-correlation |
SEMdag |
Estimate a DAG from an input (or empty) graph |
SEMdci |
SEM-based differential network analysis |
SEMgsa |
SEM-based gene set analysis |
SEMpath |
Search for directed or shortest paths between pairs of source-sink nodes |
SEMrun |
Fit a graph as a Structural Equation Model (SEM) |
SEMtree |
Tree-based structure learning methods |
Shipley.test |
Missing edge testing implied by a DAG with Shipley's basis-set |
siblings |
Node ancestry utilities |
summary.GGM |
GGM model summary |
summary.RICF |
RICF model summary |
transformData |
Transform data methods |
weightGraph |
Graph weighting methods |