enmpa-package |
enmpa: Ecological Niche Modeling using Presence-Absence Data |
aux_string_comb |
Get GLM formulas according to defined response types |
aux_var_comb |
Get GLM formulas according to defined response types |
calibration_glm |
GLM calibration with presence-absence data |
cal_res |
Example of results obtained from GLM calibration using enmpa |
enmpa |
enmpa: Ecological Niche Modeling using Presence-Absence Data |
enmpa_calibration |
Constructor of S3 objects of class enmpa_calibration |
enmpa_fitted_models |
Constructor of S3 objects of class enmpa_fitted_models |
enm_data |
Example data used to run model calibration exercises |
evaluation_stats |
Summary of evaluation statistics for candidate models |
fit_glms |
Fitting selected GLMs models |
fit_selected |
Fitting selected GLMs models |
get_formulas |
Get GLM formulas according to defined response types |
get_formulas_main |
Get GLM formulas according to defined response types |
independent_eval01 |
Evaluate final models using independent data |
independent_eval1 |
Evaluate final models using independent data |
kfold_partition |
K-fold data partitioning |
model_selection |
Selection of best candidate models considering various criteria |
model_validation |
Model validation options |
new_enmpa_calibration |
Constructor of S3 objects of class enmpa_calibration |
new_enmpa_fitted_models |
Constructor of S3 objects of class enmpa_fitted_models |
niche_signal |
Niche Signal detection using one or multiple variables |
niche_signal_permanova |
Niche Signal detection using one or multiple variables |
niche_signal_univariate |
Niche Signal detection using one or multiple variables |
optimize_metrics |
Find threshold values to produce three optimal metrics |
plot_importance |
Plot variable importance |
plot_niche_signal |
Plot Niche Signal results |
plot_niche_signal_permanova |
Plot Niche Signal results |
plot_niche_signal_univariate |
Plot Niche Signal results |
predict_glm |
Extension of glm predict to generate predictions of different types |
predict_selected |
Predictions for the models selected after calibration |
print |
Print a short version of elements in 'calibration' and 'fitted models' objects |
print-method |
Print a short version of elements in 'calibration' and 'fitted models' objects |
print.enmpa_calibration |
Print a short version of elements in 'calibration' and 'fitted models' objects |
print.enmpa_fitted_models |
Print a short version of elements in 'calibration' and 'fitted models' objects |
proc_enm |
Partial ROC calculation |
response_curve |
Variable response curves for GLMs |
sel_fit |
Example of selected models fitted |
summary |
Summary of 'calibration' and 'fitted models' |
summary-method |
Summary of 'calibration' and 'fitted models' |
summary.enmpa_calibration |
Summary of 'calibration' and 'fitted models' |
summary.enmpa_fitted_models |
Summary of 'calibration' and 'fitted models' |
test |
Example data used to test models |
var_importance |
Variable importance for GLMs |