A Code Generator for ODE-Based Models

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Documentation for package ‘rodeo’ version 0.8.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

rodeo-package	Package to Facilitate ODE-Based Modeling
buildFromWorkbook	Build a model from the contents of a workbook
compile	Generate Executable Code
dynamics	Numerical Integration
exportDF	Export a Data Frame as HTML/TEX Code
finalize	Clean-up a 'rodeo' Object
forcingFunctions	Generation of Forcing Functions in Fortran
funs	Declaration of Functions
generate	Code Generator
getPars	Query Values of Parameters
getVars	Query Values of State Variables
initialize	Initialize a 'rodeo' Object
initStepper	Initialize Internal ODE Solver
libFunc	Return name of library function
libName	Return library name
new	Initialize a 'rodeo' Object
pars	Declaration of Parameters
plotStoichiometry	Plot Qualitative Stoichiometry Matrix
pros	Declaration of Processes
rodeo	'rodeo' Class
rodeo-class	'rodeo' Class
setPars	Assign Values to Parameters
setVars	Assign Values to State Variables
step	Numerical Integration Over a Single Time Step
stoi	Specification of Stoichiometry
stoiCheck	Validation of a Stoichiometry Matrix
stoichiometry	Return the Stoichiometry Matrix
stoiCreate	Stoichiometry Matrix from Reaction Equations
vars	Declaration of Variables