rodeo-package |
Package to Facilitate ODE-Based Modeling |
buildFromWorkbook |
Build a model from the contents of a workbook |
compile |
Generate Executable Code |
dynamics |
Numerical Integration |
exportDF |
Export a Data Frame as HTML/TEX Code |
finalize |
Clean-up a 'rodeo' Object |
forcingFunctions |
Generation of Forcing Functions in Fortran |
funs |
Declaration of Functions |
generate |
Code Generator |
getPars |
Query Values of Parameters |
getVars |
Query Values of State Variables |
initialize |
Initialize a 'rodeo' Object |
initStepper |
Initialize Internal ODE Solver |
libFunc |
Return name of library function |
libName |
Return library name |
new |
Initialize a 'rodeo' Object |
pars |
Declaration of Parameters |
plotStoichiometry |
Plot Qualitative Stoichiometry Matrix |
pros |
Declaration of Processes |
rodeo |
'rodeo' Class |
rodeo-class |
'rodeo' Class |
setPars |
Assign Values to Parameters |
setVars |
Assign Values to State Variables |
step |
Numerical Integration Over a Single Time Step |
stoi |
Specification of Stoichiometry |
stoiCheck |
Validation of a Stoichiometry Matrix |
stoichiometry |
Return the Stoichiometry Matrix |
stoiCreate |
Stoichiometry Matrix from Reaction Equations |
vars |
Declaration of Variables |