BuildX |
Build a dyadic covariate matrix (X) |
epi2newick |
Prints a transmission tree in Newick format. |
epi2newickmcmc |
Prints a transmission tree in Newick format. |
epibayesmcmc |
Uses epidemic data to perform Bayesian inference on a contact network |
epinet |
Uses epidemic data to perform Bayesian inference on a contact network |
ess |
Calculate the Effective Sample Size |
HagellochDyadCov |
Hagelloch measles data. |
HagellochTimes |
Hagelloch measles data. |
MCMCcontrol |
Set control parameters for epinet MCMC algorithm |
plot.epidemic |
Plot the spread of an epidemic |
plot.epinet |
Plot the spread of an epidemic |
print.epidemic |
Prints an epidemict object |
print.epinet |
Print basic information about an epinet object |
priorcontrol |
Set prior distributions and hyperparameters for epinet MCMC algorithm |
SEIR.simulator |
Simulate an epidemic on a contact network |
SimulateDyadicLinearERGM |
Simulates an ERGM network using given covariate values |
summary.epidemic |
Summarize simulated epidemic |
summary.epinet |
Summarize posterior samples from epinet object |
write.epinet |
Writes posterior samples from an epinet object to an output file |