Epidemic/Network-Related Tools


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Documentation for package ‘epinet’ version 2.1.11

Help Pages

BuildX Build a dyadic covariate matrix (X)
epi2newick Prints a transmission tree in Newick format.
epi2newickmcmc Prints a transmission tree in Newick format.
epibayesmcmc Uses epidemic data to perform Bayesian inference on a contact network
epinet Uses epidemic data to perform Bayesian inference on a contact network
ess Calculate the Effective Sample Size
HagellochDyadCov Hagelloch measles data.
HagellochTimes Hagelloch measles data.
MCMCcontrol Set control parameters for epinet MCMC algorithm
plot.epidemic Plot the spread of an epidemic
plot.epinet Plot the spread of an epidemic
print.epidemic Prints an epidemict object
print.epinet Print basic information about an epinet object
priorcontrol Set prior distributions and hyperparameters for epinet MCMC algorithm
SEIR.simulator Simulate an epidemic on a contact network
SimulateDyadicLinearERGM Simulates an ERGM network using given covariate values
summary.epidemic Summarize simulated epidemic
summary.epinet Summarize posterior samples from epinet object
write.epinet Writes posterior samples from an epinet object to an output file