Tools for Generating, Visualizing, and Analysing Link
Communities in Networks
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Documentation for package ‘linkcomm’ version 1.0-14
- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.
Help Pages
| linkcomm-package | The 'linkcomm' package |
| corLinkcommCentrality | Correlation of Community Centrality with Classic Centrality |
| cutDendrogramAt | Extract Meta-Communities |
| edge.duplicates | Find and Remove Edge Loops and Duplicates |
| get.community.overlaps | Find Node Overlaps between Communities |
| get.shared.nodes | Get Nodes Shared by Communities |
| getAllNestedComm | Find Nested Communities |
| getClusterRelatedness | Hierarchichal Clustering of Link Communities |
| getCommunityCentrality | Calculate Community Centrality Measures for Nodes |
| getCommunityConnectedness | Calculate Community Connectedness or Modularity |
| getCommunityMatrix | Construct a Community Membership Matrix |
| getEdgesIn | Extract Edge Indices from Communities |
| getLinkCommunities | Extract Link Communities from a Network |
| getNestedHierarchies | Find Nested Structures in Communities |
| getNodesIn | Extract Nodes from Communities |
| getOCG.clusters | Generate Overlapping Cluster Generator (OCG) Communities |
| graph.feature | Make Node or Edge Graph Features |
| human_pp | Sample Human Protein Interactome |
| integer.edgelist | Convert A Network to an Integer Edgelist |
| karate | Social Network in a Karate Club |
| layout.spencer.circle | Calculate Node Coordinates for a Spencer Circle |
| lesmiserables | Co-Appearance Network from Les Miserables |
| linkcomm | The 'linkcomm' package |
| linkcomm2clustnsee | Write a Partition File for Clust&See |
| linkcomm2cytoscape | Write an Edge Attribute File for Cytoscape |
| LinkDensities | Calculate Link Community Link Densities |
| meta.communities | Produce a Set of Meta-Communities |
| newLinkCommsAt | User-Defined Link Communities |
| numberEdgesIn | Extract Node Community Membership by Edges |
| orderCommunities | Order Link Communities According to the Dendrogram |
| plot.linkcomm | The 'linkcomm' Plotting Function |
| plot.OCG | The 'OCG' Plotting Function |
| plotLinkCommDend | Plot a Coloured Dendrogram of Link Communities |
| plotLinkCommGraph | Plot a Graph Layout of Link Communities |
| plotLinkCommMembers | Plot a Community Membership Matrix for Link Communities |
| plotLinkCommSumm | Plot a Summary of the Link Community Algorithm Output |
| plotLinkCommSummComm | Plot a Summary of the Link Communities |
| plotOCGraph | Plot a Graph Layout of OCG Communities |
| pp_rnapol | Sample Yeast Protein Interactome |
| print.linkcomm | Print a Summary of a 'linkcomm' Object |
| print.OCG | Print a Summary of an 'OCG' Object |
| read.OCG | Read an OCG Partition File into R |
| weighted | Sample Gene Co-Expression Network |
| which.communities | Extract Community Membership for Nodes |