Spatial Statistical Modeling and Prediction

Documentation for package ‘spmodel’ version 0.7.0

Help Pages

-- A --

AIC.spautor	Compute AIC and AICc of fitted model objects
AIC.spgautor	Compute AIC and AICc of fitted model objects
AIC.spglm	Compute AIC and AICc of fitted model objects
AIC.splm	Compute AIC and AICc of fitted model objects
AIC.spmodel	Compute AIC and AICc of fitted model objects
AICc	Compute AIC and AICc of fitted model objects
AICc.spautor	Compute AIC and AICc of fitted model objects
AICc.spgautor	Compute AIC and AICc of fitted model objects
AICc.spglm	Compute AIC and AICc of fitted model objects
AICc.splm	Compute AIC and AICc of fitted model objects
anova.spautor	Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.spgautor	Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.spglm	Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.splm	Compute analysis of variance and likelihood ratio tests of fitted model objects
anova.spmodel	Compute analysis of variance and likelihood ratio tests of fitted model objects
augment.spautor	Augment data with information from fitted model objects
augment.spgautor	Augment data with information from fitted model objects
augment.spglm	Augment data with information from fitted model objects
augment.splm	Augment data with information from fitted model objects
augment.spmodel	Augment data with information from fitted model objects
AUROC	Area Under Receiver Operating Characteristic Curve
AUROC.spgautor	Area Under Receiver Operating Characteristic Curve
AUROC.spglm	Area Under Receiver Operating Characteristic Curve

-- B --

BIC.spautor	Compute BIC of fitted model objects
BIC.spgautor	Compute BIC of fitted model objects
BIC.spglm	Compute BIC of fitted model objects
BIC.splm	Compute BIC of fitted model objects
BIC.spmodel	Compute BIC of fitted model objects

-- C --

caribou	A caribou forage experiment
coef.spautor	Extract fitted model coefficients
coef.spgautor	Extract fitted model coefficients
coef.spglm	Extract fitted model coefficients
coef.splm	Extract fitted model coefficients
coef.spmodel	Extract fitted model coefficients
coefficients.spautor	Extract fitted model coefficients
coefficients.spgautor	Extract fitted model coefficients
coefficients.spglm	Extract fitted model coefficients
coefficients.splm	Extract fitted model coefficients
confint.spautor	Confidence intervals for fitted model parameters
confint.spgautor	Confidence intervals for fitted model parameters
confint.spglm	Confidence intervals for fitted model parameters
confint.splm	Confidence intervals for fitted model parameters
confint.spmodel	Confidence intervals for fitted model parameters
cooks.distance.spautor	Compute Cook's distance
cooks.distance.spgautor	Compute Cook's distance
cooks.distance.spglm	Compute Cook's distance
cooks.distance.splm	Compute Cook's distance
cooks.distance.spmodel	Compute Cook's distance
covmatrix	Create a covariance matrix
covmatrix.spautor	Create a covariance matrix
covmatrix.spgautor	Create a covariance matrix
covmatrix.spglm	Create a covariance matrix
covmatrix.splm	Create a covariance matrix

-- D --

deviance.spautor	Fitted model deviance
deviance.spgautor	Fitted model deviance
deviance.spglm	Fitted model deviance
deviance.splm	Fitted model deviance
deviance.spmodel	Fitted model deviance
dispersion_initial	Create a dispersion parameter initial object
dispersion_params	Create a dispersion parameter object

-- E --

esv	Compute the empirical semivariogram

-- F --

fitted.spautor	Extract model fitted values
fitted.spgautor	Extract model fitted values
fitted.spglm	Extract model fitted values
fitted.splm	Extract model fitted values
fitted.spmodel	Extract model fitted values
fitted.values.spautor	Extract model fitted values
fitted.values.spgautor	Extract model fitted values
fitted.values.spglm	Extract model fitted values
fitted.values.splm	Extract model fitted values
formula.spautor	Model formulae
formula.spgautor	Model formulae
formula.spglm	Model formulae
formula.splm	Model formulae
formula.spmodel	Model formulae

-- G --

glance.spautor	Glance at a fitted model object
glance.spgautor	Glance at a fitted model object
glance.spglm	Glance at a fitted model object
glance.splm	Glance at a fitted model object
glance.spmodel	Glance at a fitted model object
glances	Glance at many fitted model objects
glances.spautor	Glance at many fitted model objects
glances.spautor_list	Glance at many fitted model objects
glances.spgautor	Glance at many fitted model objects
glances.spgautor_list	Glance at many fitted model objects
glances.spglm	Glance at many fitted model objects
glances.spglm_list	Glance at many fitted model objects
glances.splm	Glance at many fitted model objects
glances.splm_list	Glance at many fitted model objects

-- H --

hatvalues.spautor	Compute leverage (hat) values
hatvalues.spgautor	Compute leverage (hat) values
hatvalues.spglm	Compute leverage (hat) values
hatvalues.splm	Compute leverage (hat) values
hatvalues.spmodel	Compute leverage (hat) values

-- I --

influence.spautor	Regression diagnostics
influence.spgautor	Regression diagnostics
influence.spglm	Regression diagnostics
influence.splm	Regression diagnostics
influence.spmodel	Regression diagnostics

-- L --

labels.spautor	Find labels from object
labels.spgautor	Find labels from object
labels.spglm	Find labels from object
labels.splm	Find labels from object
labels.spmodel	Find labels from object
logLik.spautor	Extract log-likelihood
logLik.spgautor	Extract log-likelihood
logLik.spglm	Extract log-likelihood
logLik.splm	Extract log-likelihood
logLik.spmodel	Extract log-likelihood
loocv	Perform leave-one-out cross validation
loocv.spautor	Perform leave-one-out cross validation
loocv.spgautor	Perform leave-one-out cross validation
loocv.spglm	Perform leave-one-out cross validation
loocv.splm	Perform leave-one-out cross validation

-- M --

model.frame.spautor	Extract the model frame from a fitted model object
model.frame.spgautor	Extract the model frame from a fitted model object
model.frame.spglm	Extract the model frame from a fitted model object
model.frame.splm	Extract the model frame from a fitted model object
model.frame.spmodel	Extract the model frame from a fitted model object
model.matrix.spautor	Extract the model matrix from a fitted model object
model.matrix.spgautor	Extract the model matrix from a fitted model object
model.matrix.spglm	Extract the model matrix from a fitted model object
model.matrix.splm	Extract the model matrix from a fitted model object
model.matrix.spmodel	Extract the model matrix from a fitted model object
moose	Moose counts and presence in Alaska, USA
moose_preds	Locations at which to predict moose counts and presence in Alaska, USA
moss	Heavy metals in mosses near a mining road in Alaska, USA

-- P --

plot.spautor	Plot fitted model diagnostics
plot.spgautor	Plot fitted model diagnostics
plot.spglm	Plot fitted model diagnostics
plot.splm	Plot fitted model diagnostics
plot.spmodel	Plot fitted model diagnostics
predict.spautor	Model predictions (Kriging)
predict.spautorRF	Model predictions (Kriging)
predict.spautorRF_list	Model predictions (Kriging)
predict.spautor_list	Model predictions (Kriging)
predict.spgautor	Model predictions (Kriging)
predict.spgautor_list	Model predictions (Kriging)
predict.spglm	Model predictions (Kriging)
predict.spglm_list	Model predictions (Kriging)
predict.splm	Model predictions (Kriging)
predict.splmRF	Model predictions (Kriging)
predict.splmRF_list	Model predictions (Kriging)
predict.splm_list	Model predictions (Kriging)
predict.spmodel	Model predictions (Kriging)
print.anova.spautor	Print values
print.anova.spgautor	Print values
print.anova.spglm	Print values
print.anova.splm	Print values
print.spautor	Print values
print.spgautor	Print values
print.spglm	Print values
print.splm	Print values
print.spmodel	Print values
print.summary.spautor	Print values
print.summary.spgautor	Print values
print.summary.spglm	Print values
print.summary.splm	Print values
pseudoR2	Compute a pseudo r-squared
pseudoR2.spautor	Compute a pseudo r-squared
pseudoR2.spgautor	Compute a pseudo r-squared
pseudoR2.spglm	Compute a pseudo r-squared
pseudoR2.splm	Compute a pseudo r-squared

-- R --

randcov_initial	Create a random effects covariance parameter initial object
randcov_params	Create a random effects covariance parameter object
resid.spautor	Extract fitted model residuals
resid.spgautor	Extract fitted model residuals
resid.spglm	Extract fitted model residuals
resid.splm	Extract fitted model residuals
residuals.spautor	Extract fitted model residuals
residuals.spgautor	Extract fitted model residuals
residuals.spglm	Extract fitted model residuals
residuals.splm	Extract fitted model residuals
residuals.spmodel	Extract fitted model residuals
rstandard.spautor	Extract fitted model residuals
rstandard.spgautor	Extract fitted model residuals
rstandard.spglm	Extract fitted model residuals
rstandard.splm	Extract fitted model residuals

-- S --

seal	Estimated harbor-seal trends from abundance data in southeast Alaska, USA
spautor	Fit spatial autoregressive models
spautorRF	Fit random forest spatial residual models
spcov_initial	Create a spatial covariance parameter initial object
spcov_params	Create a spatial covariance parameter object
spgautor	Fit spatial generalized autoregressive models
spglm	Fit spatial generalized linear models
splm	Fit spatial linear models
splmRF	Fit random forest spatial residual models
sprbeta	Simulate a spatial beta random variable
sprbinom	Simulate a spatial binomial random variable
sprgamma	Simulate a spatial gamma random variable
sprinvgauss	Simulate a spatial inverse gaussian random variable
sprnbinom	Simulate a spatial negative binomial random variable
sprnorm	Simulate a spatial normal (Gaussian) random variable
sprnorm.car	Simulate a spatial normal (Gaussian) random variable
sprnorm.exponential	Simulate a spatial normal (Gaussian) random variable
sprnorm.none	Simulate a spatial normal (Gaussian) random variable
sprpois	Simulate a spatial Poisson random variable
sulfate	Sulfate atmospheric deposition in the conterminous USA
sulfate_preds	Locations at which to predict sulfate atmospheric deposition in the conterminous USA
summary.spautor	Summarize a fitted model object
summary.spgautor	Summarize a fitted model object
summary.spglm	Summarize a fitted model object
summary.splm	Summarize a fitted model object
summary.spmodel	Summarize a fitted model object

-- T --

tidy.anova.spautor	Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.anova.spgautor	Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.anova.spglm	Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.anova.splm	Compute analysis of variance and likelihood ratio tests of fitted model objects
tidy.spautor	Tidy a fitted model object
tidy.spgautor	Tidy a fitted model object
tidy.spglm	Tidy a fitted model object
tidy.splm	Tidy a fitted model object
tidy.spmodel	Tidy a fitted model object

-- V --

varcomp	Variability component comparison
varcomp.spautor	Variability component comparison
varcomp.spgautor	Variability component comparison
varcomp.spglm	Variability component comparison
varcomp.splm	Variability component comparison
vcov.spautor	Calculate variance-covariance matrix for a fitted model object
vcov.spgautor	Calculate variance-covariance matrix for a fitted model object
vcov.spglm	Calculate variance-covariance matrix for a fitted model object
vcov.splm	Calculate variance-covariance matrix for a fitted model object
vcov.spmodel	Calculate variance-covariance matrix for a fitted model object