aa_coi_PHMM |
Amino acid profile hidden Markov model for coi5p. |
censored_translation |
Censored Translation of a DNA string. |
coi5p |
Build a coi5p object from a DNA sequence string. |
coi5p_pipe |
Run the entire coi5p pipeline for an input sequence. |
coil |
'coil': evaluation of COI-5P barcode data |
example_barcode_data |
Example barcode data. |
example_nt_string |
Example coi5p DNA sequence string |
flatten_coi5p |
Flatten a list of coi5p output objects into a dataframe. |
frame |
Take a coi5p sequence and place it in reading frame. |
frame.coi5p |
Take a coi5p sequence and place it in reading frame. |
indel_check |
Check if a coi5p sequence likely contains an error. |
indel_check.coi5p |
Check if a coi5p sequence likely contains an error. |
nt_coi_PHMM |
Nucleotide profile hidden Markov model for coi5p. |
subsetPHMM |
Subset an existing PHMM. |
translate |
Translate a coi5p sequence. |
translate.coi5p |
Translate a coi5p sequence. |
trans_df |
Data frame containing the translation table recommendation. |
which_trans_table |
Determine the translation table to use for a given taxonomic group. |