| analyse_sim |
Analyse simulations of time-to-event data using arbitrary event, censoring and recruitment distributions. |
| Blank |
Blank Curve constructor function |
| createRFfunction |
Method for creating a random draw function from a Curve object |
| createRFfunction-method |
Method for creating a random draw function from a Curve object |
| create_tte_prior |
Create an arbitrary prior data set from a specified Curve object |
| Curve-class |
Curve Class for defining distributions |
| evaluateCDFfunction |
Method for evaluating the CDF function for a Curve object at q |
| evaluateCDFfunction-method |
Method for evaluating the CDF function for a Curve object at q |
| evaluateInvfunction |
Method for evaluating the inverse-CDF function for a Curve object at p |
| evaluateInvfunction-method |
Method for evaluating the inverse-CDF function for a Curve object at p |
| evaluatePDFfunction |
Method for evaluating the PDF function for a Curve object at x |
| evaluatePDFfunction-method |
Method for evaluating the PDF function for a Curve object at x |
| event_prediction |
Event prediction using patient-level survival data and a recruitment RCurve |
| event_prediction_KM |
Event prediction using a lifetable and a recruitment RCurve |
| event_prediction_prior |
Event prediction using patient-level survival data, prior data and a recruitment RCurve |
| Exponential |
Exponential Curve constructor function |
| fit_KM |
Fit Weibull, Log-Normal or Exponential survival curves to Kaplan Meier estimates |
| fit_tte_data |
Fit Weibull, Log-Normal or Exponential survival curves to patient-level time-to-event data |
| fit_tte_data_prior |
Fit Weibull survival curves to patient-level time-to-event data by including patient-level weighted prior data |
| frontierpower |
Calculate Frontier power from number of events |
| getAssessCDFfunction |
Method for returning the CDF function for a RCurve object |
| getAssessCDFfunction-method |
Method for returning the CDF function for a RCurve object |
| getCDFfunction |
Method for returning the CDF function for a Curve object |
| getCDFfunction-method |
Method for returning the CDF function for a Curve object |
| getInvfunction |
Method for returning the inverse-CDF function for a Curve object |
| getInvfunction-method |
Method for returning the inverse-CDF function for a Curve object |
| getLength |
Method for returning the recruitment length from a RCurve |
| getLength-method |
Method for returning the recruitment length from a RCurve |
| getMaxF |
Method for returning maximum duration of patient follow-up from a RCurve |
| getMaxF-method |
Method for returning maximum duration of patient follow-up from a RCurve |
| getN |
Method for returning the total patient number from a RCurve |
| getN-method |
Method for returning the total patient number from a RCurve |
| getNactive |
Method for returning the active arm patient number from a RCurve |
| getNactive-method |
Method for returning the active arm patient number from a RCurve |
| getNames |
Method for returning all parameter names from a Curve object |
| getNames-method |
Method for returning all parameter names from a Curve object |
| getNcontrol |
Method for returning the control arm patient number from a RCurve |
| getNcontrol-method |
Method for returning the control arm patient number from a RCurve |
| getParam |
Method for returning a single parameter from a Curve object |
| getParam-method |
Method for returning a single parameter from a Curve object |
| getParams |
Method for returning all parameters from a Curve object as a list |
| getParams-method |
Method for returning all parameters from a Curve object as a list |
| getParamsV |
Method for returning all parameters from a Curve object as a vector |
| getParamsV-method |
Method for returning all parameters from a Curve object as a vector |
| getPatients |
Method for calculating expected number of recruited patients at a given time from an RCurve |
| getPatients-method |
Method for calculating expected number of recruited patients at a given time from an RCurve |
| getPDFfunction |
Method for returning the PDF function for a Curve object |
| getPDFfunction-method |
Method for returning the PDF function for a Curve object |
| getRatio |
Method for returning the recruitment ratio from a RCurve |
| getRatio-method |
Method for returning the recruitment ratio from a RCurve |
| getRFfunction |
Method for returning the RF function for a Curve object |
| getRFfunction-method |
Method for returning the RF function for a Curve object |
| getType |
Method for returning the Curve type |
| getType-method |
Method for returning the Curve type |
| GGamma |
Generalised Gamma Curve constructor function |
| Gompertz |
Gompertz Curve constructor function |
| InstantR |
InstantR RCurve constructor function |
| LinearR |
LinearR RCurve constructor function |
| LogLogistic |
Log-logistic Curve constructor function |
| Lognormal |
Log-normal Curve constructor function |
| MixExp |
Mixture Exponential Curve constructor function |
| MixWei |
Mixture Weibull Curve constructor function |
| nph_traj |
Calculate analytic time-to-event trial properties under non-proportional hazards and complex assumptions |
| PieceExponential |
Piecewise Exponential Curve constructor function |
| PieceR |
PieceR RCurve constructor function |
| PieceRMaxF |
PieceR RCurve constructor function |
| plotCDF |
Method for plotting the CDF of a Curve object |
| plotCDF-method |
Method for plotting the CDF of a Curve object |
| plotRecruitment |
Method for plotting the Recruitment Function of a RCurve object |
| plotRecruitment-method |
Method for plotting the Recruitment Function of a RCurve object |
| plotSF |
Method for plotting the Survival Function of a Curve object |
| plotSF-method |
Method for plotting the Survival Function of a Curve object |
| plot_ep |
Plot event prediction output |
| plot_km_fit |
Kaplan Meier Plot of Curve-Fit |
| plot_npht |
Plot output from nph_traj |
| random_draw |
Method for taking random draws from a Curve object distribution |
| random_draw-method |
Method for taking random draws from a Curve object distribution |
| RCurve-class |
RCurve Class for defining recruitment distributions |
| run_gestate |
Load Shiny for Gestate Loads the Shiny interactive GUI for gestate |
| setPatients |
Method for setting N's in an RCurve |
| setPatients-method |
Method for setting N's in an RCurve |
| set_assess_time |
Adjusts assessment time for simulations |
| set_event_number |
Adjusts simulations so that administrative censoring occurs at a fixed event number, rather than a fixed time |
| show-method |
Method for displaying Curve objects neatly - replaces standard show method |
| show-method |
Method for displaying RCurve objects neatly - replaces standard show method |
| simulate_trials |
Perform simulations of time-to-event data using arbitrary event, censoring and recruitment distributions. |
| simulate_trials_strata |
Perform multi-strata simulations of time-to-event data using arbitrary event, censoring and recruitment distributions. |
| summarise_analysis |
Summarise analyses of simulations of time-to-event data using arbitrary event, censoring and recruitment distributions. |
| survfit_fast |
Create lifetable quickly |
| Weibull |
Weibull Curve constructor function |
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