Fast Likelihood Calculation for Phylogenetic Comparative Models

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Documentation for package ‘PCMBaseCpp’ version 0.1.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

benchmarkData	Data for performing a benchmark
benchmarkResults	Results from running a performance benchmark on a personal computer including the time for parameter transformation
benchmarkResultsNoTransform	Results from running a performance benchmark on a personal computer excluding the time for parameter transformation
BenchmarkRvsCpp	A log-likelihood calculation time comparison for different numbers of traits and option-sets
MiniBenchmarkRvsCpp	Evaluate the likelihood calculation times for example trees and data
PCListInt	Converts the logical matrix pc into a list of vectors denoting the (0-based) TRUE-indices in each column
PCMBaseCppIsADevRelease	Check if the PCMBaseCpp version correpsonds to a dev release
PCMInfoCpp	A S3 generic for creating C++ backend objects given a model, data and a tree.
PCMParamGetFullVector	Get a vector with all model parameters unrolled
PCMTreePreorderCpp	Fast preorder of the edges in a tree