StrainRanking-package |
Ranking of Pathogen Strains |
China |
Compositions of Magnaporthe oryzae collected in China |
Clades |
Compositions of Pseudomonas syringae at the clade resolution |
DG |
Class '"DGobj"' |
DG class |
Class '"DGobj"' |
DG object |
Class '"DGobj"' |
DGobj |
Class '"DGobj"' |
DGobj-class |
Class '"DGobj"' |
DGobj.rawdata |
Construction of a DG object from raw data |
DGobj.simul.mechanistic |
Simulation of a DG object under a mechanistic model |
DGobj.simul.regression |
Simulation of a DG object under a regression model |
Galibier |
Compositions of Puccinia triticina in Galibier crops |
generation.alpha.3strains |
Generation of parameters for the simulations under the regression model |
gmcpic.test |
Function implementing the Generalized Monte Carlo plug-in test with calibration (GMCPIC test) |
Haplotypes |
Compositions of Pseudomonas syringae at the haplotype resolution |
Kalango |
Compositions of Puccinia triticina in Kalango crops |
Madagascar |
Compositions of Magnaporthe oryzae collected in Madagascar |
MoryzaeChina |
Compositions of Magnaporthe oryzae collected in China |
MoryzaeMadagascar |
Compositions of Magnaporthe oryzae collected in Madagascar |
names-method |
Class '"DGobj"' |
PathogenCompositionMoryzaeChina |
Compositions of Magnaporthe oryzae collected in China |
PathogenCompositionMoryzaeMadagascar |
Compositions of Magnaporthe oryzae collected in Madagascar |
PathogenCompositionPsyringaeClades |
Compositions of Pseudomonas syringae at the clade resolution |
PathogenCompositionPsyringaeHaplotypes |
Compositions of Pseudomonas syringae at the haplotype resolution |
PathogenCompositionPsyringaePhylogroups |
Compositions of Pseudomonas syringae at the phylogroup resolution |
PathogenCompositionPtriticinaGalibier |
Compositions of Puccinia triticina in Galibier crops |
PathogenCompositionPtriticinaKalango |
Compositions of Puccinia triticina in Kalango crops |
Phylogroups |
Compositions of Pseudomonas syringae at the phylogroup resolution |
powderymildew |
Demographic and genetic real data |
PsyringaeClades |
Compositions of Pseudomonas syringae at the clade resolution |
PsyringaeHaplotypes |
Compositions of Pseudomonas syringae at the haplotype resolution |
PsyringaePhylogroups |
Compositions of Pseudomonas syringae at the phylogroup resolution |
PtriticinaGalibier |
Compositions of Puccinia triticina in Galibier crops |
PtriticinaKalango |
Compositions of Puccinia triticina in Kalango crops |
ranking.strains |
Method for ranking pathogen strains |
show-method |
Class '"DGobj"' |
StrainRanking |
Ranking of Pathogen Strains |
summary-method |
Class '"DGobj"' |
[-method |
Class '"DGobj"' |
[<--method |
Class '"DGobj"' |