Handling, Visualisation and Analysis of Epidemiological Contacts
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Documentation for package ‘epicontacts’ version 1.1.3
Help Pages
| as.igraph.epicontacts | Create igraph object from contact data |
| cases_pal | Color tools and palettes for epicontacts |
| codeawesome | Reference codes for fontawesome |
| edges_pal | Color tools and palettes for epicontacts |
| epicontacts | Read linelist and contact data |
| fac2col | Color tools and palettes for epicontacts |
| get_clusters | Assign cluster IDs to epicontacts data |
| get_degree | Find node degree for epicontacts objects |
| get_id | Access unique identifiers in epicontacts objects |
| get_pairwise | Characterise contacts by comparing case attributes |
| graph3D | Interactive 3D Force-directed graph from epicontacts object |
| make_epicontacts | Read linelist and contact data |
| plot.epicontacts | Plot epicontacts objects |
| print.epicontacts | Print method for epicontacts objects |
| print.summary_epicontacts | Print method for summary_epicontacts objects |
| spectral | Color tools and palettes for epicontacts |
| subset.epicontacts | Subset an epicontact object by factors |
| subset_clusters_by_id | Subset epicontacts by case-specified clusters |
| subset_clusters_by_size | Subset clusters from epicontacts object by cluster size |
| summary.epicontacts | Summary method for epicontacts objects |
| summary_epicontacts | Summary method for epicontacts objects |
| thin | Thin data to retain matching linelist / contacts |
| transp | Color tools and palettes for epicontacts |
| vis_epicontacts | Plot epicontacts objects using visNetwork |
| [.epicontacts | Subset epicontacts objects based on case identifiers |