agvgd |
Align-GVGD (A-GVGD) |
alignment_file |
Pre-bundled alignments |
amino_acids |
The 20 standard amino acids |
cpv_ranges |
Determine CPV ranges |
dev |
Deviation function |
gd |
Grantham deviation |
gv |
Grantham variation |
poi_to_res |
Convert an alignment position to residue position |
profile_to_alignment |
Converts a sequence profile to an alignment |
read_alignment |
Read a protein sequence multiple alignment |
read_substitutions |
Read a file with amino acid substitutions |
res_to_poi |
Convert a residue position to an alignment position |
write_alignment |
Export an alignment to FASTA |
write_substitutions |
Generate and export a list of substitutions |