Extract Remote Sensing Vegetation Phenology
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Documentation for package ‘phenofit’ version 0.3.9
Help Pages
| CA_NS6 | MOD13A1 EVI observations at flux site CA-NS6 |
| check_input | check_input |
| check_ylu | check_ylu |
| curvefit | Fine curve fitting |
| curvefits | Fine Curve fitting |
| curvefits_LocalModel | curvefits by local model functions of TIMESAT |
| doubleLog.AG | Fine fitting functions |
| doubleLog.AG2 | Fine fitting functions |
| doubleLog.Beck | Fine fitting functions |
| doubleLog.Elmore | Fine fitting functions |
| doubleLog.Gu | Fine fitting functions |
| doubleLog.Klos | Fine fitting functions |
| doubleLog.Zhang | Fine fitting functions |
| findpeaks | findpeaks |
| FitDL | Fine fitting |
| FitDL.AG | Fine fitting |
| FitDL.AG2 | Fine fitting |
| FitDL.Beck | Fine fitting |
| FitDL.Elmore | Fine fitting |
| FitDL.Gu | Fine fitting |
| FitDL.Klos | Fine fitting |
| FitDL.Zhang | Fine fitting |
| f_goal | Goal function of fine curve fitting methods |
| getBits | Initial weights according to qc |
| get_fitting | getFittings |
| get_fitting.fFITs | getFittings |
| get_fitting.list | getFittings |
| get_GOF | get_GOF |
| get_GOF.fFIT | get_GOF |
| get_GOF.fFITs | get_GOF |
| get_GOF.list | get_GOF |
| get_options | set and get phenofit option |
| get_param | Get parameters from curve fitting result |
| get_param.fFIT | Get parameters from curve fitting result |
| get_param.fFITs | Get parameters from curve fitting result |
| get_param.list | Get parameters from curve fitting result |
| get_pheno | get_pheno |
| get_pheno.fFITs | get_pheno |
| get_pheno.list | get_pheno |
| get_pheno.rfit | get_pheno |
| GOF | GOF |
| input_single | input object with one growing season per year |
| Logistic | Fine fitting functions |
| merge_LocalModels | curvefits by local model functions of TIMESAT |
| MOD13A1 | MOD13A1 |
| movmean | movmean |
| optim_pheno | optim_pheno |
| opt_FUN | Unified optimization function |
| opt_nlm | Unified optimization function |
| opt_nlminb | Unified optimization function |
| opt_optim | Unified optimization function |
| opt_ucminf | Unified optimization function |
| PhenoDeriv | Phenology extraction in Derivative method (DER) |
| PhenoDeriv.default | Phenology extraction in Derivative method (DER) |
| PhenoDeriv.fFIT | Phenology extraction in Derivative method (DER) |
| PhenoGu | Phenology extraction in GU method (GU) |
| PhenoGu.default | Phenology extraction in GU method (GU) |
| PhenoGu.fFIT | Phenology extraction in GU method (GU) |
| PhenoKl | Phenology extraction in Inflection method (Zhang) |
| PhenoTrs | Phenology extraction in Threshold method (TRS) |
| PhenoTrs.default | Phenology extraction in Threshold method (TRS) |
| PhenoTrs.fFIT | Phenology extraction in Threshold method (TRS) |
| plot_curvefits | plot_curvefits |
| plot_input | Plot INPUT returned by check_input |
| plot_season | plot_season |
| qcFUN | Initial weights according to qc |
| qc_5l | Initial weights according to qc |
| qc_FparLai | Initial weights according to qc |
| qc_NDVI3g | Initial weights according to qc |
| qc_NDVIv4 | Initial weights according to qc |
| qc_sentinel2 | Initial weights for sentinel2 according to SCL band |
| qc_SPOT | Initial weights according to qc |
| qc_StateQA | Initial weights according to qc |
| qc_summary | Initial weights according to qc |
| rcpp_SG | Weighted Savitzky-Golay written in RcppArmadillo |
| rcpp_wSG | Weighted Savitzky-Golay written in RcppArmadillo |
| season_mov | Moving growing season division |
| set_options | set and get phenofit option |
| smooth_wHANTS | Weighted HANTS SMOOTH |
| smooth_wSG | Weighted Savitzky-Golay |
| smooth_wWHIT | Weigthed Whittaker Smoother |
| wBisquare | Weight updating functions |
| wBisquare0 | Weight updating functions |
| wChen | Weight updating functions |
| whit2 | Weighted Whittaker smoothing with a second order finite difference penalty |
| wKong | Weight updating functions |
| wSELF | Weight updating functions |
| wTSM | Weight updating functions |