EHR-package |
Electronic Health Record (EHR) Data Processing and Analysis Tool |
addLastDose |
Add Lastdose Data |
analysisPheWAS |
Statistical Analysis for PheWAS |
buildDose |
Combine Dose Data |
collapseDose |
Collapse Dose Data |
dataTransformation |
Data Transformation |
dd |
dd |
dd.baseline |
dd.baseline |
dd.baseline.small |
dd.baseline.small |
dd.small |
dd.small |
EHR |
Electronic Health Record (EHR) Data Processing and Analysis Tool |
extractMed |
Extract medication information from clinical notes |
freqNum |
Convert Character Frequency to Numeric |
idCrosswalk |
Create ID Crosswalk |
lam_metadata |
Example of Metadata for Lamotrigine Data |
lam_mxr_parsed |
Example of Lamotrigine Output from 'parseMedExtractR' |
Logistf |
Firth's penalized-likelihood logistic regression with more decimal places of p-value than 'logistf' function in the R package 'logistf' |
makeDose |
Make Dose Data |
parseCLAMP |
Parse CLAMP NLP Output |
parseMedEx |
Parse MedEx NLP Output |
parseMedExtractR |
Parse medExtractR NLP Output |
parseMedXN |
Parse MedXN NLP Output |
processLastDose |
Process and standardize extracted last dose times |
pullFakeId |
Pull Fake/Mod ID |
pullRealId |
Pull Real ID |
readTransform |
Read and Transform |
run_Build_PK_IV |
Build-PK-IV Module |
run_Build_PK_Oral |
Build-PK-Oral Module |
run_Demo |
Run Demographic Data |
run_DrugLevel |
Run Drug Level Data |
run_Labs |
Run Lab Data |
run_MedStrI |
Run Str Data I |
run_MedStrII |
Run Structured E-Prescription Data |
stdzDose |
Standardize Dose Entity |
stdzDoseChange |
Standardize Dose Change Entity |
stdzDoseSchedule |
Standardize Dose Schedule Entity |
stdzDuration |
Standardize Duration Entity |
stdzFreq |
Standardize Frequency Entity |
stdzRoute |
Standardize Route Entity |
stdzStrength |
Standardize Strength Entity |
tac_lab |
Example of Lab Time Data for Tacrolimus |
tac_metadata |
Example of Metadata for Tacrolimus Data |
tac_mxr_parsed |
Example of Tacrolimus Output from 'parseMedExtractR' |
zeroOneTable |
Make Zero One Contingency Tables |