Lining Up Two Sets of Measurements

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Documentation for package ‘lineup’ version 0.42

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

calc.locallod	Calculate LOD score at physical position of each gene
combinedist	Combine distance matrices into a single such
corbetw2mat	Calculate correlations between columns of two matrices
distee	Calculate distance between two gene expression data sets
disteg	Calculate distance between two gene expression data sets
expr-data	Example gene expression data
expr1	Example gene expression data
expr2	Example gene expression data
f2cross	Example experimental cross data
find.gene.pseudomarker	Find nearest peudomarker to each gene
findCommonID	Find individuals in common between a cross and a phenotype matrix
fscale	Standardize the columns of a matrix
genepos	Genomic positions of genes in simulated expression data
lineupversion	Installed version of R/lineup
omitdiag	Replace the diagonal in a distance matrix with missing values
plot.lineupdist	Plot summary of inter-individual distances
plot2dist	Plot two sets of inter-individual distances against one another
plotEGclass	Plot classifier of eQTL genotype from expression data
pmap	Physical map of markers
pulldiag	Pull out the diagonal from a distance matrix
subset.lineupdist	Subsetting distance matrix
summary.lineupdist	Summarize inter-individual distances
[.lineupdist	Subsetting distance matrix