Graph Based Multiple Comparison Procedures

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Documentation for package ‘gMCP’ version 0.8-17

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B C D E F G H I J M N P R S T U W

gMCP-package Graphical described Multiple Comparison Procedures

-- B --

BauerEtAl2001 Functions that create different example graphs
bdiagNA Create a Block Diagonal Matrix with NA outside the diagonal
bonferroni.test Weighted Bonferroni-test
bonferroni.trimmed.simes.test Trimmed Simes test for intersections of two hypotheses and otherwise weighted Bonferroni-test
BonferroniHolm Functions that create different example graphs
BretzEtAl2009a Functions that create different example graphs
BretzEtAl2009b Functions that create different example graphs
BretzEtAl2009c Functions that create different example graphs
BretzEtAl2011 Functions that create different example graphs

-- C --

calcPower Calculate power values
corMatWizard Graphical User Interface for the creation of correlation matrices
cycleGraph Functions that create different example graphs

-- D --

doInterim EXPERIMENTAL: Evaluate conditional errors at interim for a pre-planned graphical procedure

-- E --

edgeAttr Class graphMCP
edgeAttr-method Class graphMCP
edgeAttr<- Class graphMCP
edgeAttr<--method Class graphMCP
Entangled1Maurer2012 Functions that create different example graphs
Entangled2Maurer2012 Functions that create different example graphs
entangledMCP Class entangledMCP
entangledMCP-class Class entangledMCP
exampleGraphs Functions that create different example graphs
extractPower Calculate power values

-- F --

fallback Functions that create different example graphs
Ferber2011 Functions that create different example graphs
FerberTimeDose2011 Functions that create different example graphs
fixedSequence Functions that create different example graphs

-- G --

generalSuccessive Functions that create different example graphs
generateBounds generateBounds
generatePvals generatePvals
generateTest generateTest
generateWeights generateWeights
getJavaInfo Get Memory and Runtime Info from JVM
getMatrices Class entangledMCP
getMatrices-method Class entangledMCP
getMatrix Class graphMCP
getMatrix-method Class graphMCP
getNodes Class graphMCP
getNodes-method Class entangledMCP
getNodes-method Class graphMCP
getRejected Class graphMCP
getRejected-method Class entangledMCP
getRejected-method Class gMCPResult
getRejected-method Class gPADInterim
getRejected-method Class graphMCP
getWeights Class graphMCP
getWeights-method Class entangledMCP
getWeights-method Class gMCPResult
getWeights-method Class gPADInterim
getWeights-method Class graphMCP
getXCoordinates Class graphMCP
getXCoordinates-method Class entangledMCP
getXCoordinates-method Class graphMCP
getYCoordinates Class graphMCP
getYCoordinates-method Class entangledMCP
getYCoordinates-method Class graphMCP
gMCP Graph based Multiple Comparison Procedures
gMCP.extended Graph based Multiple Comparison Procedures
gMCPReport Automatic Generation of gMCP Reports
gMCPResult Class gMCPResult
gMCPResult-class Class gMCPResult
gPADInterim Class gPADInterim
gPADInterim-class Class gPADInterim
graph2latex Graph2LaTeX
graph2matrix Matrix2Graph and Graph2Matrix
graphAnalysis Analysis of a gMCP-Graph
graphGUI Graphical User Interface for graphical described multiple comparison procedures
graphMCP Class graphMCP
graphMCP-class Class graphMCP
graphTest Multiple testing using graphs

-- H --

HommelEtAl2007 Functions that create different example graphs
HommelEtAl2007Simple Functions that create different example graphs
HungEtWang2010 Functions that create different example graphs
HuqueAloshEtBhore2011 Functions that create different example graphs
hydroquinone Hydroquinone Mutagenicity Assay

-- I --

improvedFallbackI Functions that create different example graphs
improvedFallbackII Functions that create different example graphs
improvedParallelGatekeeping Functions that create different example graphs

-- J --

joinGraphs Joins two graphMCP objects

-- M --

matrix2graph Matrix2Graph and Graph2Matrix
MaurerEtAl1995 Functions that create different example graphs

-- N --

nodeAttr Class graphMCP
nodeAttr-method Class graphMCP
nodeAttr<- Class graphMCP
nodeAttr<--method Class graphMCP

-- P --

parallelGatekeeping Functions that create different example graphs
parametric.test Weighted parametric test
placeNodes Placement of graph nodes
plot-method Class gMCPResult
plot-method Class gPADInterim
plot-method Class graphMCP
plotSimCI Plot confidence intervals
print-method Class entangledMCP
print-method Class gMCPResult
print-method Class gPADInterim
print-method Class graphMCP

-- R --

rejectNode Rejects a node/hypothesis and updates the graph accordingly.
replaceVariables Replaces variables in a general graph with specified numeric values
rqmvnorm Random sample from the multivariate normal distribution

-- S --

sampSize Sample size calculations
sampSizeCore Function for sample size calculation
secondStageTest EXPERIMENTAL: Construct a valid level alpha test for the second stage of an adaptive design that is based on a pre-planned graphical MCP
setEdge Class graphMCP
setEdge-method Class graphMCP
setRejected<- Class graphMCP
setRejected<--method Class graphMCP
setWeights Class graphMCP
setWeights-method Class graphMCP
simConfint Simultaneous confidence intervals for sequentially rejective multiple test procedures
simConfint-method Simultaneous confidence intervals for sequentially rejective multiple test procedures
simes.on.subsets.test Simes on subsets, otherwise Bonferroni
simes.test Weighted Simes test
simpleSuccessiveI Functions that create different example graphs
simpleSuccessiveII Functions that create different example graphs
simvastatin Simvastatin and Colesevelam Treatment in Patients with Primary Hypercholesterolemia
subgraph Get a subgraph
substituteEps Substitute Epsilon

-- T --

truncatedHolm Functions that create different example graphs

-- U --

unitTestsGMCP Run the R unit (and optional the JUnit) test suite for gMCP

-- W --

WangTing2014 Functions that create different example graphs
weighted.test.functions Weighted Test Functions for use with gMCP