Compositional Data Analysis for Microbiome Studies
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Documentation for package ‘coda4microbiome’ version 0.2.3
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| coda4microbiome | coda4microbiome: Compositional Data Analysis for Microbiome Studies |
| coda_coxnet | coda_coxnet |
| coda_glmnet | coda_glmnet |
| coda_glmnet0 | coda_glmnet0 |
| coda_glmnet_longitudinal | coda_glmnet_longitudinal |
| coda_glmnet_longitudinal0 | coda_glmnet_longitudinal0 |
| coda_glmnet_longitudinal_null | coda_glmnet_longitudinal_null |
| coda_glmnet_null | coda_glmnet_null |
| Crohn | Crohn |
| ecam_filtered | ecam_filtered |
| Event | data_survival |
| Event_time | data_survival |
| explore_logratios | explore_logratios |
| explore_lr_longitudinal | explore_lr_longitudinal |
| explore_zeros | explore_zeros |
| filter_longitudinal | filter_longitudinal |
| HIV | HIV |
| impute_zeros | impute_zeros |
| integralFun | integralFun |
| logratios_matrix | logratios_matrix |
| metadata | ecam_filtered |
| MSM_HIV | HIV |
| plotMedianCurve | plotMedianCurve |
| plot_prediction | plot_prediction |
| plot_riskscore | plot_riskscore |
| plot_signature | plot_signature |
| plot_signature_curves | plot_signature_curves |
| plot_survcurves | plot_survcurves |
| sCD14 | sCD14 |
| shannon | shannon |
| shannon_effnum | shannon_effnum |
| shannon_sim | shannon_sim |
| taxanames | ecam_filtered |
| x | data_survival |
| x_Crohn | Crohn |
| x_ecam | ecam_filtered |
| x_HIV | HIV |
| x_sCD14 | sCD14 |
| y_Crohn | Crohn |
| y_HIV | HIV |
| y_sCD14 | sCD14 |