bursts.check_subconductance |
Check if segment contains subconductive states |
bursts.conductance_states |
Return a list of all the (sub)conductance states. |
bursts.copy |
Copy a list of bursts (by value) |
bursts.defined_by_tcrit |
Divide a recording into bursts defined by a critical time. |
bursts.get_gaps |
Get the gaps between bursts. |
bursts.impose_deadtime |
Imposes a deadtime to each segment in a burst. |
bursts.modify_conductance |
Transform the conductance states according to a user-defined function of conductance level. |
bursts.pcloseds |
Return pcloseds of every burst. |
bursts.popens |
Return popens of every burst. |
bursts.recombine |
Combine bursts into one recording (with obvious spaces between them). |
bursts.remove_first_and_last |
Remove the first and last burst from the list. |
bursts.select |
From a list of bursts, extract those that interest you by passing a selecting function. |
bursts.sort |
Order a list of bursts by some function. For instance, popen. |
bursts.space_out |
Artificially add amount of time between bursts (in absence of recording information). |
bursts.start_times_update |
(DON'T USE THIS) Fix meta-data of bursts. |
bursts.subconductance_as |
Imposes a fixed conductance level (0 or 1) to all dwells with subconductance levels to each segment in a burst |
clampfit.read |
Read a .xlsx file output from clampfit |
cplot.conductance_hist |
Histogram of Conductance States |
cplot.log_root_axes |
Add log-root axes to histogram plot |
cplot.pclosed_ts |
Plot Time Series (ts) of P(Closed). |
cplot.popen_ts |
Plot Time Series (ts) of P(Open). |
dwt.read |
Read a .dwt file. |
dwt.write |
Write a dwt file to disk. Writes DOS line endings. Dwells are in milliseconds |
evt.extract_header |
Extract header from evt file. |
evt.from_dwells |
Converts dwell durations to absolute transition times. |
evt.read |
Read a .evt file to a table. Times are in seconds |
evt.to_dwells |
Calculate pulse lengths. Converts transition times to dwell durations. |
evt.write |
Write bursts to a .evt file. |
hst.extract_header |
Extract header from hst file. |
hst.read |
Read a MIL ".hst" file to a table. |
hst.write |
Write bursts to a log10(ms)-sqrt(Frequency) .hst file from open and closed tables. |
risetime.correct_gaussian |
Undo the effect of the gaussian filter. |
scan.read |
Read a scan results text file. scan.read returns a 1 segment list Reads in scan results and puts them in the same format as the output of dwt.read. See 'dwt', and 'segment' for more information. |
segment.check_subconductance |
Check if segment contains subconductive states |
segment.closed_dwells |
Extract closed dwells. |
segment.conductance_states |
Return a list of all the (sub)conductance states. |
segment.consecutives_to_dwells |
Collapses a segment into dwells with alternating conductance levels. |
segment.copy |
Copy a segment |
segment.count_closed |
Extract number of closed dwells. In the case of subconductive states, a dwell is only closed if the conductance is exactly zero. |
segment.count_dwells |
Extract number of dwells in segment. |
segment.count_open |
Extract number of open dwells. In the case of subconductive states, count the number of non-zero states. |
segment.create |
Create a "segment" object |
segment.duration |
Get duration of a segment. |
segment.dwells_by_conductance |
Extract dwells in conductance range. lower <= x <= upper |
segment.dwells_by_conductance_range |
Extract dwells in conductance range. lower <= x <= upper |
segment.impose_deadtime |
Imposes a deadtime to a segment by removing any dwell that is shorter than the deadtime. |
segment.modify_conductance |
Transform the conductance states according to a user-defined function of conductance level. |
segment.name |
Extract name from segment. |
segment.open_dwells |
Extract open dwells. (Any conductance greater than zero) |
segment.pclosed |
Calculate empirical P(Closed) of a segment. |
segment.pconductance |
Calculate empirical P(Lower <= Conductance <= Upper) of a segment. |
segment.pconductance_range |
Calculate empirical P(Lower <= Conductance <= Upper) of a segment. |
segment.popen |
Calculate empirical P(Open) of a segment. (A state is considered open if the conductance is non-zero) |
segment.seg |
Extract segment number from segment. |
segment.start_time |
Extract start_time from segment. |
segment.subconductance_as |
Imposes a fixed conductance level (0 or 1) to all dwells with subconductance levels. |
segment.verify |
Detect misrecorded data. |
util.basename |
Remove suffix and path from filename. |