Fit a Cosinor Model Using a Generalised Mixed Modelling Framework

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Documentation for package ‘GLMMcosinor’ version 0.2.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

amp_acro	Used to specify a cosinor component in the model formula.
autoplot.cglmm	Plot a cosinor model
cglmm	Fit cosinor model with '{glmmTMB}'
cosinor_mixed	cosinor_mixed dataset for cosinor modelling examples.
fit_model_and_process	Fit the cosinor GLMM model using the output from 'update_formula_and_data()' and a new formula
polar_plot	Generates a polar plot with elliptical confidence intervals
polar_plot.cglmm	Generates a polar plot with elliptical confidence intervals
predict.cglmm	Predict from a cosinor model
print.cglmm	Print a brief summary of the 'cglmm' model.
print.cglmmSubTest	Print test of model
print.cglmmSummary	Print the summary of a cosinor model
print.cglmmTest	Print results of test of cosinor model
sigma.cglmm	Extract residual standard deviation or dispersion parameter
simulate_cosinor	Simulate data from a cosinor model
summary.cglmm	Summarize a cosinor model Given a time variable and optional covariates, generate inference a cosinor fit. Gives estimates, confidence intervals, and tests for the raw parameters, and for the mean, amplitude, and acrophase parameters. If the model includes covariates, the function returns the estimates of the mean, amplitude, and acrophase for the group with covariates equal to 1 and equal to 0. This may not be the desired result for continuous covariates.
test_cosinor_components	Test for differences in a cosinor model between components.
test_cosinor_levels	Test for differences in a cosinor model between levels of the grouping variable.
update_formula_and_data	Update data and formula for fitting cglmm model
vitamind	Vitamin D dataset for cosinor modelling examples.