Presentation-Ready Data Summary and Analytic Result Tables

Documentation for package ‘gtsummary’ version 2.0.0

Help Pages

-- A --

add_ci	Add CI Column
add_ci.tbl_summary	Add CI Column
add_ci.tbl_svysummary	Add CI Column
add_difference.tbl_summary	Add differences between groups
add_difference.tbl_svysummary	Add differences between groups
add_glance	Add model statistics
add_glance_source_note	Add model statistics
add_glance_table	Add model statistics
add_global_p	Add the global p-values
add_global_p.tbl_regression	Add the global p-values
add_global_p.tbl_uvregression	Add the global p-values
add_n.tbl_regression	Add N to regression table
add_n.tbl_summary	Add column with N
add_n.tbl_survfit	Add N
add_n.tbl_svysummary	Add column with N
add_n.tbl_uvregression	Add N to regression table
add_nevent	Add event N
add_nevent.tbl_regression	Add event N
add_nevent.tbl_survfit	Add event N
add_nevent.tbl_uvregression	Add event N
add_nevent_regression	Add event N
add_n_regression	Add N to regression table
add_n_summary	Add column with N
add_overall	Add overall column
add_overall.tbl_continuous	Add overall column
add_overall.tbl_custom_summary	Add overall column
add_overall.tbl_summary	Add overall column
add_overall.tbl_svysummary	Add overall column
add_p.tbl_continuous	Add p-values
add_p.tbl_cross	Add p-value
add_p.tbl_summary	Add p-values
add_p.tbl_survfit	Add p-value
add_p.tbl_svysummary	Add p-values
add_q	Add multiple comparison adjustment
add_significance_stars	Add significance stars
add_stat	Add a custom statistic
add_stat_label	Add statistic labels
add_stat_label.tbl_summary	Add statistic labels
add_stat_label.tbl_svysummary	Add statistic labels
add_vif	Add Variance Inflation Factor
all_categorical	Select helper functions
all_continuous	Select helper functions
all_continuous2	Select helper functions
all_contrasts	Select helper functions
all_dichotomous	Select helper functions
all_interaction	Select helper functions
all_intercepts	Select helper functions
all_stat_cols	Select helper functions
all_tests	Select helper functions
as.data.frame.gtsummary	Convert gtsummary object to a tibble
assign_summary_digits	Assign Default Digits
assign_summary_type	Assign Default Summary Type
assign_tests	Assign Test
assign_tests.tbl_continuous	Assign Test
assign_tests.tbl_summary	Assign Test
assign_tests.tbl_survfit	Assign Test
assign_tests.tbl_svysummary	Assign Test
as_flex_table	Convert gtsummary object to a flextable object
as_gt	Convert gtsummary object to gt
as_hux_table	Convert gtsummary object to a huxtable object
as_hux_xlsx	Convert gtsummary object to a huxtable object
as_kable	Convert gtsummary object to a kable object
as_kable_extra	Convert gtsummary object to a kableExtra object
as_tibble.gtsummary	Convert gtsummary object to a tibble

-- B --

bold_italicize_labels_levels	Bold or Italicize
bold_labels	Bold or Italicize
bold_labels.gtsummary	Bold or Italicize
bold_labels.tbl_cross	Bold or Italicize
bold_levels	Bold or Italicize
bold_levels.gtsummary	Bold or Italicize
bold_levels.tbl_cross	Bold or Italicize
bold_p	Bold significant p-values
brdg_continuous	Continuous Summary Table Bridges
brdg_summary	Summary table bridge
brdg_wide_summary	Wide summary table bridge

-- C --

check_gtsummary_theme	Set gtsummary theme
combine_terms	Combine terms
custom_tidiers	Custom tidiers

-- F --

filter_p

Sort/filter by p-values

-- G --

get_gtsummary_theme

Set gtsummary theme

-- I --

inline_text.gtsummary	Report statistics from summary tables inline
inline_text.tbl_continuous	Report statistics from summary tables inline
inline_text.tbl_cross	Report statistics from cross table inline
inline_text.tbl_regression	Report statistics from regression summary tables inline
inline_text.tbl_summary	Report statistics from summary tables inline
inline_text.tbl_survfit	Report statistics from survfit tables inline
inline_text.tbl_svysummary	Report statistics from summary tables inline
inline_text.tbl_uvregression	Report statistics from regression summary tables inline
italicize_labels	Bold or Italicize
italicize_labels.gtsummary	Bold or Italicize
italicize_labels.tbl_cross	Bold or Italicize
italicize_levels	Bold or Italicize
italicize_levels.gtsummary	Bold or Italicize
italicize_levels.tbl_cross	Bold or Italicize

-- L --

label_style	Style Functions
label_style_number	Style Functions
label_style_percent	Style Functions
label_style_pvalue	Style Functions
label_style_ratio	Style Functions
label_style_sigfig	Style Functions

-- M --

modify	Modify column headers, footnotes, and spanning headers
modify_caption	Modify table caption
modify_column_alignment	Modify column alignment
modify_column_hide	Modify hidden columns
modify_column_indent	Modify column indentation
modify_column_merge	Modify Column Merging
modify_column_unhide	Modify hidden columns
modify_fmt_fun	Modify formatting functions
modify_footnote	Modify column headers, footnotes, and spanning headers
modify_header	Modify column headers, footnotes, and spanning headers
modify_spanning_header	Modify column headers, footnotes, and spanning headers
modify_table_body	Modify Table Body
modify_table_styling	Modify Table Styling

-- P --

pier_summary_categorical	Summary table bridge
pier_summary_continuous	Summary table bridge
pier_summary_continuous2	Summary table bridge
pier_summary_dichotomous	Summary table bridge
pier_summary_missing_row	Summary table bridge
plot	Plot Regression Coefficients
plot.tbl_regression	Plot Regression Coefficients
plot.tbl_uvregression	Plot Regression Coefficients
pool_and_tidy_mice	Custom tidiers
print.tbl_split	Split gtsummary table
proportion_summary	Summarize a proportion

-- R --

ratio_summary	Summarize the ratio of two variables
remove_row_type	Remove rows
reset_gtsummary_theme	Set gtsummary theme

-- S --

select_helpers	Select helper functions
separate_p_footnotes	Create footnotes for individual p-values
set_gtsummary_theme	Set gtsummary theme
show_header_names	Modify column headers, footnotes, and spanning headers
sort_filter_p	Sort/filter by p-values
sort_p	Sort/filter by p-values
style_number	Style numbers
style_percent	Style percentages
style_pvalue	Style p-values
style_ratio	Style ratios
style_sigfig	Style significant figure-like rounding

-- T --

tbl_ard_continuous	Summarize continuous variable
tbl_ard_summary	ARD summary table
tbl_ard_wide_summary	Wide ARD summary table
tbl_butcher	Butcher table
tbl_continuous	Summarize continuous variable
tbl_cross	Cross table
tbl_custom_summary	Create a table of summary statistics using a custom summary function
tbl_merge	Merge tables
tbl_regression	Regression model summary
tbl_regression.default	Regression model summary
tbl_split	Split gtsummary table
tbl_split.gtsummary	Split gtsummary table
tbl_stack	Stack tables
tbl_strata	Stratified gtsummary tables
tbl_strata2	Stratified gtsummary tables
tbl_summary	Summary table
tbl_survfit	Survival table
tbl_survfit.data.frame	Survival table
tbl_survfit.list	Survival table
tbl_survfit.survfit	Survival table
tbl_svysummary	Create a table of summary statistics from a survey object
tbl_uvregression	Univariable regression model summary
tbl_uvregression.data.frame	Univariable regression model summary
tbl_uvregression.survey.design	Univariable regression model summary
tbl_wide_summary	Wide summary table
theme_gtsummary	Available gtsummary themes
theme_gtsummary_compact	Available gtsummary themes
theme_gtsummary_continuous2	Available gtsummary themes
theme_gtsummary_eda	Available gtsummary themes
theme_gtsummary_journal	Available gtsummary themes
theme_gtsummary_language	Available gtsummary themes
theme_gtsummary_mean_sd	Available gtsummary themes
theme_gtsummary_printer	Available gtsummary themes
tidy_bootstrap	Custom tidiers
tidy_gam	Custom tidiers
tidy_robust	Custom tidiers
tidy_standardize	Custom tidiers
tidy_wald_test	Custom tidiers
trial	Results from a simulated study of two chemotherapy agents

-- W --

with_gtsummary_theme

Set gtsummary theme