Phylogenetic Tools for Eco-Phylogenetics
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Documentation for package ‘phylotools’ version 0.2.2
Help Pages
| phylotools-package | Phylogenetic tools for building PHYLIP supermatrix and more |
| clean.fasta.name | Clean the name of a fasta file |
| dat2fasta | Convert and Save sequence data frame to fasta file |
| dat2phylip | Conver the data frame to sequential PHYLIP format file |
| get.fasta.name | get the names of all the sequences of fasta file |
| get.phylip.name | get the names of sequences from a PHYLIP file |
| phylotools | Phylogenetic tools for building PHYLIP supermatrix and more |
| read.fasta | Read FASTA file |
| read.phylip | read phylip file |
| rename.fasta | Rename the sequences for a fasta file |
| rm.sequence.fasta | Delete sequences from fasta file |
| split_dat | grouping the data frame containing sequences and names and generate fasta file |
| sub.taxa.label | Substitute the tip labels of a phylogenetic tree |
| supermat | Build PHYLIP supermatrix and RAxML partition file using aligned FASTA or PHYLIP files. |