phylotools-package |
Phylogenetic tools for building PHYLIP supermatrix and more |
clean.fasta.name |
Clean the name of a fasta file |
dat2fasta |
Convert and Save sequence data frame to fasta file |
dat2phylip |
Conver the data frame to sequential PHYLIP format file |
get.fasta.name |
get the names of all the sequences of fasta file |
get.phylip.name |
get the names of sequences from a PHYLIP file |
phylotools |
Phylogenetic tools for building PHYLIP supermatrix and more |
read.fasta |
Read FASTA file |
read.phylip |
read phylip file |
rename.fasta |
Rename the sequences for a fasta file |
rm.sequence.fasta |
Delete sequences from fasta file |
split_dat |
grouping the data frame containing sequences and names and generate fasta file |
sub.taxa.label |
Substitute the tip labels of a phylogenetic tree |
supermat |
Build PHYLIP supermatrix and RAxML partition file using aligned FASTA or PHYLIP files. |