Hidden Markov Models of Character Evolution
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Documentation for package ‘corHMM’ version 2.8
Help Pages
| ancRECON | Ancestral state reconstruction |
| ConvertPhangornReconstructions | Convert phangorn reconstruction to a vector |
| corDISC | Correlated evolution binary traits |
| corHMM | Hidden Rates Model |
| dev.raydisc | Evolution of categorical traits |
| dropStateMatPars | Combines several rate class index matrices |
| equateStateMatPars | Combines several rate class index matrices |
| fitCorrelationTest | Test for correlation |
| getFullMat | Combines several rate class index matrices |
| getRateCatMat | Combines several rate class index matrices |
| getStateMat4Dat | Produce an index matrix and legend from a dataset |
| makeSimmap | Simulate a character history |
| plotMKmodel | Plot a Markov model |
| plotRECON | Plot ancestral state reconstructions |
| primates | Example datasets |
| primates.paint | Example datasets |
| rayDISC | Evolution of categorical traits |
| rayDISC.example | Example datasets |