demo_biseq_DMR |
BiSeq Output Demo Dataset |
demo_biseq_methyrate |
BiSeq Methyrate Demo Dataset |
demo_desq_out |
DESeq Output Dataset |
demo_DMRfinder_DMRs |
DMRfinder Output Demo Dataset |
demo_DMRfinder_rate_combine |
DMRfinder Methyrate Demo Dataset |
demo_methylkit_methyrate |
Methyrate Dataset |
demo_methylkit_met_all |
Methyrate output dataset from methylKit |
demo_metilene_input |
Metilene Methyrate Demo Dataset |
demo_metilene_out |
Metilene Demo Output Dataset |
evalue_buildin_sql |
Build-in data process function |
evalue_buildin_var_fmt_nm |
Build-in check file format function Perform the format check and data clean for the "metilene" or "biseq", "DMRfinder" or "methylKit" method correspondingly. |
metevalue.biseq |
Calculate E-value of the BiSeq data format |
metevalue.biseq.chk |
Check the BiSeq data format |
metevalue.DMRfinder |
Calculate E-value of the DMRfinder data format |
metevalue.DMRfinder.chk |
Check the DMRfinder data format |
metevalue.methylKit |
Calculate E-value of the methylKit data format |
metevalue.methylKit.chk |
Check the methylKit data format |
metevalue.metilene |
Calculate E-value of the Metilene data format |
metevalue.metilene.chk |
Check the Metilene data format |
metevalue.RNA_general |
A general method to calculate the e-value for RNA-seq data. |
varevalue.metilene |
Calculate E-value of the Metilene data |
varevalue.single_general |
A general method to calculate the e-value for other DNA methylation tools not described above. The input data is the DNA methylation rates using the similar format with Metilene. |