Small-Area-Estimation Unit/Area Models and Methods for Estimation in R

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Documentation for package ‘SUMMER’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

SUMMER-package	SUMMER package documentation.
adjustPopMat	Generating pixellated populations, and population frames
aggPixelPreds	Helper function of 'pixelPopToArea'
aggPop	Aggregate populations to the specified areal level
aggregateSurvey	Aggregate estimators from different surveys.
areaPopToArea	Aggregate populations to the specified areal level
Benchmark	Benchmark posterior draws to national estimates
BRFSS	The BRFSS dataset
calibrateByRegion	Calibrate the point level totals so their sum matches the regional totals
ChangeRegion	Map region names to a common set.
compareEstimates	Plot heatmap comparing pairwise posterior exceedence probabilities for svysae object
DemoData	Simulated child mortality person-month dataset.
DemoData2	Simulated dataset for prevalence mapping.
DemoMap	Uganda Admin-1 region map for illustration purpose
DemoMap2	Kenya Admin-1 region map for illustration purpose
easpaKenya	Kenya 2009 Census Frame and Related Datasets
easpaKenyaNeonatal	Kenya 2009 Census Frame and Related Datasets
expit	Expit transformation
fitGeneric	Fit space-time smoothing models for a generic outcome from complex surveys.
fitINLA	Smoothed direct estimates for mortality rates
fitINLA2	Cluster-level space-time smoothing models for mortality rates
getAdjusted	Adjust direct estimates and their associated variances
getAmat	Extract adjacency matrix from the map
getAreaName	Determines which administrative areas contain the given points
getBirths	Reformat full birth records into person-month format
getCounts	Aggregate person-month data into counts and totals by groups.
getDiag	Extract posterior summaries of random effects
getDirect	Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for a single survey.
getDirectList	Obtain the Horvitz-Thompson direct estimates and standard errors using delta method for multiple surveys.
getExpectedNperEA	Internal functions for population simulation
getPoppsub	Generating pixellated populations, and population frames
getSmoothed	Extract smoothed estimates.
getSmoothedDensity	Calculate and plot posterior densities of the projected estimates
getSortIndices	Internal functions for population simulation
hatchPlot	Plot maps with uncertainty hatching.
iid.new	New random IID models for m-year to period random effects
iid.new.pc	New random IID models for m-year to period random effects
KenData	Auxiliary data for Kenya 2014 DHS.
kenyaPopulationData	Kenya 2009 Census Frame and Related Datasets
KingCounty	Map of King County
logit	Logit transformation
logitNormMean	Calculate the mean of a distribution whose logit is Gaussian
makePopIntegrationTab	Generating pixellated populations, and population frames
MalawiData	Auxiliary data for Malawi 2000, 2004, 2010, and 2015 DHS.
MalawiMap	Malawi Admin-2 map
mapEstimates	Mapping estimates for svysae object
mapPlot	Plot region-level variables on a map
mapPoints	Map GPS points to polygon regions
pixelPopToArea	Aggregate populations to the specified areal level
plot.SUMMERproj	Plot projection output.
poppaKenya	Kenya 2009 Census Frame and Related Datasets
poppRegionFromPopMat	Generate a population frame of a similar format to poppa argument of 'simPopCustom' with a custom set of regions
poppsubKenya	Kenya 2009 Census Frame and Related Datasets
print.SUMMERmodel	Print method for the smoothing models.
print.SUMMERmodel.svy	Print method for the smoothing models from 'smoothSurvey'.
print.SUMMERprojlist	Print method for the combined projection output.
projKenya	Map projection for Kenya
ridgePlot	Calculate and plot posterior densities of the projected estimates
rmultinom1	Internal functions for population simulation
rMyMultinomial	Internal functions for population simulation
rMyMultinomialSubarea	Internal functions for population simulation
rst	Simulate spatial and temporal random effects
rStratifiedMultnomial	Internal functions for population simulation
rStratifiedMultnomialBySubarea	Internal functions for population simulation
rw.new	New random walk 1 and 2 models for m-year to period random effects
rw.new.pc	New random walk 1 and 2 models for m-year to period random effects
sampleNMultilevelMultinomial	Internal functions for population simulation
sampleNMultilevelMultinomialFixed	Internal functions for population simulation
setThresholdsByRegion	Set thresholds of population density for urbanicity classifications within each region of the given type
simhyper	Simulate hyperpriors from an GMRF
simPop	Simulate populations and areal prevalences
simPopCustom	Simulate populations and areal prevalences
simPopInternal	Internal functions for population simulation
simPopSPDE	Simulate populations and areal prevalences
simSPDE	Simulate from the SPDE spatial model
smoothArea	Small area estimation via basic area level model
smoothCluster	Cluster-level space-time smoothing models for mortality rates
smoothDirect	Smoothed direct estimates for mortality rates
smoothSurvey	Fit space-time smoothing models for a generic outcome from complex surveys.
smoothUnit	Smooth via basic unit level model
st.new	New Type I to IV space time interaction models for m-year to period random effects
st.new.pc	New Type I to IV space time interaction models for m-year to period random effects
summary.SUMMERmodel	Summary method for the smoothing models.
summary.SUMMERmodel.svy	Summary method for the smoothing model and output from 'smoothSurvey'.
summary.SUMMERprojlist	Summary method for the combined projection output. This function is the print method for class 'SUMMERprojlist'.
SUMMER	SUMMER package documentation.
tcpPlot	Discrete-color maps based on the True Classification Probabilities