Alert Time Quality - Evaluating Timely Epidemic Metrics

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Documentation for package ‘ATQ’ version 0.2.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

alarm_metrics	Create an Alarm Metrics Object
alarm_plot_data	Create Alarm Plot Data Object
best_model	Create Best Model
catchment_sim	Simulating catchment areas
compile_epi	Compile Epidemic Data
create_alarm_metrics_summary	Create Alarm Metrics Summary
elementary_pop	Create Elementary Schools population size
eval_metrics	Evaluate Alarm Metrics for Epidemic Models
plot.alarm_metrics	Plot Heatmap of Alarm Metrics
plot.alarm_plot_data	Plot Epidemic Data with Alarm Metrics
plot.ssir_epidemic	Plot method for a single SSIR epidemic simulation
plot.ssir_epidemic_multi	Plot method for multiple SSIR epidemic simulations
plot_single_epidemic	Plot a single epidemic simulation
simulate_households	Simulate total households and individuals data
ssir	Stochastic SIR simulation
subpop_children	Simulate households with children
subpop_noChildren	Simulate households without children
summary.alarm_metrics_summary	Summary of Alarm Metrics
summary.ssir_epidemic	S3 Summary method for epidemic Simulation
summary.ssir_epidemic_multi	S3 Summary method for multiple epidemic simulations