Multivariate Morphometric Analysis

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Documentation for package ‘MorphoTools2’ version 1.0.1.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

boxMTest	Box's M-test for Homogeneity of Covariance Matrices
boxplotAll	Box Plots
boxplotCharacter	Box Plots
cda.calc	Canonical Discriminant Analysis
cdadata	Class Cdadata
centaurea	25 Morphological Characters of Three Species of the _Centaurea phrygia_ Complex
characters	List Morphological Characters
classif.knn	Classificatory Discriminant Analysis
classif.lda	Classificatory Discriminant Analysis
classif.matrix	Format the Classifdata to Summary Table
classif.qda	Classificatory Discriminant Analysis
classifdata	Class classifdata
classifSample.knn	Classificatory Discriminant Analysis
classifSample.lda	Classificatory Discriminant Analysis
classifSample.qda	Classificatory Discriminant Analysis
clust	Hierarchical Clustering
cormat	Correlations of Characters
cormatSignifTest	Correlations of Characters
descrAll	Descriptive Statistics
descrPopulation	Descriptive Statistics
descrTaxon	Descriptive Statistics
exportRes	Export Data
head.classifdata	Return the First or Last Parts of an Object
head.morphodata	Return the First or Last Parts of an Object
histAll	Histograms of Characters
histCharacter	Histograms of Characters
keepCharacter	Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
keepPopulation	Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
keepSample	Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
keepTaxon	Keep Items (Taxa, Populations, Samples, Morphological Characters) in an Morphodata Object (and Remove Others)
knn.select	Search for the Optimal K-nearest Neighbours
missingCharactersTable	Summarize Missing Data
missingSamplesTable	Summarize Missing Data
morphodata	Class morphodata
naMeanSubst	Replace Missing Data by Population Average
nmds.calc	Non-metric Multidimensional Scaling (NMDS)
nmdsdata	Class nmdsdata
pca.calc	Principal Component Analysis
pcadata	Class pcadata
pcoa.calc	Principal Coordinates Analysis (PCoA)
pcoadata	Class pcoadata
plot3Dpoints	The Default Scatterplot 3D Function
plotAddEllipses	Add Prediction Ellipses to a Plot
plotAddLabels.characters	Add Labels to a Plot
plotAddLabels.points	Add Labels to a Plot
plotAddLegend	Add Legend to a Plot
plotAddSpiders	Add Spiders to a Plot
plotCharacters	Draws Character's Contribution as Arrows
plotPoints	The Default Scatterplot Function
populations	Data Input and Description
populOTU	Population Means
qqnormAll	Quantile-Quantile Plots
qqnormCharacter	Quantile-Quantile Plots
read.morphodata	Data Input and Description
removeCharacter	Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
removePopulation	Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
removeSample	Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
removeTaxon	Remove Items (Taxa, Populations, Morphological Characters) from Morphodata Object
samples	Data Input and Description
shapiroWilkTest	Shapiro-Wilk Normality Test
stepdisc.calc	Stepwise Discriminant Analysis
summary	Object Summaries
summary.cdadata	Object Summaries
summary.classifdata	Object Summaries
summary.morphodata	Object Summaries
summary.nmdsdata	Object Summaries
summary.pcadata	Object Summaries
summary.pcoadata	Object Summaries
tail.classifdata	Return the First or Last Parts of an Object
tail.morphodata	Return the First or Last Parts of an Object
taxa	Data Input and Description
transformCharacter	Transformation of Character
viewMorphodata	Invoke a Data Viewer