align.pedigree |
Generate plotting information for a pedigree |
as.data.frame.pedigree |
data.frame from a pedigree object |
autohint |
Align a pedigree to print well |
bitSize |
Calculate pedigree bitsize, defined as 2 * # NonFounders - # Founders |
excludeStrayMarryin |
Find or trim unavailable subjects in a pedigree |
excludeUnavailFounders |
Find or trim unavailable subjects in a pedigree |
familycheck |
Error check for a family classification |
findAvailAffected |
Find a single person to trim from a pedigree whose is available |
findAvailNonInform |
Find subjects from a pedigree who are available and uninformative |
findUnavailable |
Find or trim unavailable subjects in a pedigree |
fixParents |
Fix details on the parents for children of the pedigree |
ibdMatrix |
Create an IBD matrix |
kindepth |
Compute the depth of each subject in a pedigree |
kinship |
Compute a kinship matrix |
kinship.default |
Compute a kinship matrix |
kinship.pedigree |
Compute a kinship matrix |
kinship.pedigreeList |
Compute a kinship matrix |
kinship2 |
The kinship2 package for pedigree data |
legendPlot |
Legend Pedigree Plot |
makefamid |
Construct a family id from pedigree information |
makekinship |
Create a sparse kinship matrix |
minnbreast |
Minnesota Breast Cancer Study |
minnbreast2 |
Minnesota Breast Cancer Study |
pedigree |
Create a pedigree or pedigreeList object |
pedigree.legend |
plot a legend for a pedigree |
pedigree.shrink |
Shrink pedigree object |
pedigree.trim |
Find or trim unavailable subjects in a pedigree |
pedigree.unrelated |
Determine set of maximum number of unrelated available subjects from a pedigree |
plot.pedigree |
plot pedigrees |
plot.pedigree.shrink |
plot pedigree.shrink object that is a shrunk pedigree object |
print.pedigree |
Create a pedigree or pedigreeList object |
print.pedigree.shrink |
Shrink pedigree object |
print.pedigreeList |
Create a pedigree or pedigreeList object |
sample.ped |
Two example pedigrees |
testped1 |
testped1 |
[.pedigree |
Create a pedigree or pedigreeList object |
[.pedigreeList |
Create a pedigree or pedigreeList object |