Pedigree Functions

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Documentation for package ‘kinship2’ version 1.9.6.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

align.pedigree	Generate plotting information for a pedigree
as.data.frame.pedigree	data.frame from a pedigree object
autohint	Align a pedigree to print well
bitSize	Calculate pedigree bitsize, defined as 2 * # NonFounders - # Founders
excludeStrayMarryin	Find or trim unavailable subjects in a pedigree
excludeUnavailFounders	Find or trim unavailable subjects in a pedigree
familycheck	Error check for a family classification
findAvailAffected	Find a single person to trim from a pedigree whose is available
findAvailNonInform	Find subjects from a pedigree who are available and uninformative
findUnavailable	Find or trim unavailable subjects in a pedigree
fixParents	Fix details on the parents for children of the pedigree
ibdMatrix	Create an IBD matrix
kindepth	Compute the depth of each subject in a pedigree
kinship	Compute a kinship matrix
kinship.default	Compute a kinship matrix
kinship.pedigree	Compute a kinship matrix
kinship.pedigreeList	Compute a kinship matrix
kinship2	The kinship2 package for pedigree data
legendPlot	Legend Pedigree Plot
makefamid	Construct a family id from pedigree information
makekinship	Create a sparse kinship matrix
minnbreast	Minnesota Breast Cancer Study
minnbreast2	Minnesota Breast Cancer Study
pedigree	Create a pedigree or pedigreeList object
pedigree.legend	plot a legend for a pedigree
pedigree.shrink	Shrink pedigree object
pedigree.trim	Find or trim unavailable subjects in a pedigree
pedigree.unrelated	Determine set of maximum number of unrelated available subjects from a pedigree
plot.pedigree	plot pedigrees
plot.pedigree.shrink	plot pedigree.shrink object that is a shrunk pedigree object
print.pedigree	Create a pedigree or pedigreeList object
print.pedigree.shrink	Shrink pedigree object
print.pedigreeList	Create a pedigree or pedigreeList object
sample.ped	Two example pedigrees
testped1	testped1
[.pedigree	Create a pedigree or pedigreeList object
[.pedigreeList	Create a pedigree or pedigreeList object