cytometree-package |
Binary tree algorithm for cytometry data analysis. |

Annotation |
Annotates cell populations found using CytomeTree. |

bootstrapCI |
Bootstrapped Confidence Interval. |

CytofTree |
Binary tree algorithm for mass cytometry data analysis. |

CytomeTree |
Binary tree algorithm for cytometry data analysis. |

cytometree |
Binary tree algorithm for cytometry data analysis. |

DLBCL |
Diffuse large B-cell lymphoma data set from the FlowCAP-I challenge. |

FmeasureC |
C++ implementation of the F-measure computation |

FmeasureC_no0 |
C++ implementation of the F-measure computation without the reference class labeled "0" |

HIPC |
HIPC T cell data set from HIPC program, patient 12828. The data was analyzed and gated by Stanford. |

IMdata |
Influenza vaccine response dataset |

plot_cytopop |
Plot the cell count for each population using CytomeTree. |

plot_graph |
Plot the binary tree built using CytomeTree. |

plot_nodes |
Plot the distribution of the observed cells at each node of the binary tree built using CytomeTree. |

RetrievePops |
Retrieve cell populations found using Annotation. |