Utilities for Data Analyses in Seed Germination/Emergence Assays

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Documentation for package ‘drcSeedGerm’ version 1.0.1

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alfalfaSG Field-book for a germination assay with alfalfa
barley A series of germination assays with barley
excalibur Relationship between germination rate and water potential in oilseed rape (var. Excalibur)
festuca Relationship between germination rate and water potential in Festuca arundinacea L.
GRPsi.Lin Hydro-time models based on the germination rate
GRPsi.Pol Hydro-time models based on the germination rate
GRPsi.Pol2 Hydro-time models based on the germination rate
GRPsiLin Hydro-time models based on the germination rate
GRPsiLin.fun Hydro-time models based on the germination rate
GRPsiPol Hydro-time models based on the germination rate
GRPsiPol.fun Hydro-time models based on the germination rate
GRPsiPol2 Hydro-time models based on the germination rate
GRPsiPol2.fun Hydro-time models based on the germination rate
GRT.BS Thermal-time models based on the germination rate
GRT.BS.fun Thermal-time models based on the germination rate
GRT.BSb Thermal-time models based on the germination rate
GRT.BSb.fun Thermal-time models based on the germination rate
GRT.Ex Thermal-time models based on the germination rate
GRT.Ex.fun Thermal-time models based on the germination rate
GRT.Exb Thermal-time models based on the germination rate
GRT.Exb.fun Thermal-time models based on the germination rate
GRT.GH Thermal-time models based on the germination rate
GRT.GH.fun Thermal-time models based on the germination rate
GRT.GH2 Thermal-time models based on the germination rate
GRT.GH2.fun Thermal-time models based on the germination rate
GRT.M Thermal-time models based on the germination rate
GRT.M.fun Thermal-time models based on the germination rate
GRT.Mb Thermal-time models based on the germination rate
GRT.Mb.fun Thermal-time models based on the germination rate
GRT.RF Thermal-time models based on the germination rate
GRT.RF.fun Thermal-time models based on the germination rate
GRT.RFb Thermal-time models based on the germination rate
GRT.RFb.fun Thermal-time models based on the germination rate
GRT.YL Thermal-time models based on the germination rate
GRT.YL.fun Thermal-time models based on the germination rate
GRTPsi.BS Hydro-Thermal-time models based on the germination rate
GRTPsi.BS.fun Hydro-Thermal-time models based on the germination rate
GRTPsi.M Hydro-Thermal-time models based on the germination rate
GRTPsi.M.fun Hydro-Thermal-time models based on the germination rate
hordeum Germination of Hordeum spontaneum at different temperatures and water potentials
HTE1 Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)
HTE1.fun Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)
HTE2 Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)
HTE2.fun Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)
HTE3 Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)
HTE3.fun Hydrotime model with log-logistic distribution of germination time (Onofri et al., 2018)
HTex Hydrotime model with Type II Extreme Value distribution of base water potential (Mesgaran et al., 2013)
HTex.fun Hydrotime model with Type II Extreme Value distribution of base water potential (Mesgaran et al., 2013)
HTG Hydrotime model with Gumbel distribution of base water potential (Mesgaran et al., 2013)
HTG.fun Hydrotime model with Gumbel distribution of base water potential (Mesgaran et al., 2013)
HTL Hydrotime model with logistic distribution of base water potential (Mesgaran et al., 2013)
HTL.fun Hydrotime model with logistic distribution of base water potential (Mesgaran et al., 2013)
HTLL Hydrotime model with log-logistic distribution of base water potential (Mesgaran et al., 2013)
HTLL.fun Hydrotime model with log-logistic distribution of base water potential (Mesgaran et al., 2013)
HTnorm Hydrotime model with normal distribution of base water potential (Bradford, 2002)
HTnorm.fun Hydrotime model with normal distribution of base water potential (Bradford, 2002)
HTTEM Hydro-thermal-time model with log-logistic distribution of germination time (Onofri et al., 2018)
HTTEM.fun Hydro-thermal-time model with log-logistic distribution of germination time (Onofri et al., 2018)
HTTLL.BS Hydro-thermal-time model with log-logistic distribution of base water potential (Mesgaran et al., 2017)
HTTLL.BS.fun Hydro-thermal-time model with log-logistic distribution of base water potential (Mesgaran et al., 2017)
HTTLL.M Hydro-thermal-time model with log-logistic distribution of base water potential (Mesgaran et al., 2017)
HTTLL.M.fun Hydro-thermal-time model with log-logistic distribution of base water potential (Mesgaran et al., 2017)
HTTnorm.BS Hydro-thermal-time model with normal distribution of base water potential (Bradford, 2002)
HTTnorm.BS.fun Hydro-thermal-time model with normal distribution of base water potential (Bradford, 2002)
HTTnorm.M Hydro-thermal-time model with normal distribution of base water potential (Bradford, 2002)
HTTnorm.M.fun Hydro-thermal-time model with normal distribution of base water potential (Bradford, 2002)
HTW1 Hydrotime model with Weibull Type I distribution of base water potential (Mesgaran et al., 2013)
HTW1.fun Hydrotime model with Weibull Type I distribution of base water potential (Mesgaran et al., 2013)
HTW2 Hydrotime model with Weibull Type II distribution of base water potential (Mesgaran et al., 2013)
HTW2.fun Hydrotime model with Weibull Type II distribution of base water potential (Mesgaran et al., 2013)
jackGroupSE Delete-a-Petri-dish jackknife
makeDrm Reshape a seed germination datasets for time-to-event analyses (deprecated)
makeDrm2 Reshape a seed germination datasets for time-to-event model fitting.
phalaris A series of germination assays with Phalaris minor
PmaxPsi1 Effect of environmental water potential or temperature on the germination capability of a seed lot
PmaxPsi1.fun Effect of environmental water potential or temperature on the germination capability of a seed lot
PmaxT1 Effect of environmental water potential or temperature on the germination capability of a seed lot
PmaxT1.fun Effect of environmental water potential or temperature on the germination capability of a seed lot
rape Germination data from an assay of rapeseed at decreasing water potential levels
rape2G Germination data from an assay of rapeseed at decreasing water potential levels
TTEM Thermal-time models with log-logistic distribution of germination time (Onofri et al., 2018)
TTEM.fun Thermal-time models with log-logistic distribution of germination time (Onofri et al., 2018)
TTERF Thermal-time models with log-logistic distribution of germination time (Onofri et al., 2018)
TTERF.fun Thermal-time models with log-logistic distribution of germination time (Onofri et al., 2018)
TTERFc Thermal-time models with log-logistic distribution of germination time (Onofri et al., 2018)
TTERFc.fun Thermal-time models with log-logistic distribution of germination time (Onofri et al., 2018)