bold-package |
bold |
bold |
bold |
bold_filter |
Filter BOLD specimen + sequence data (output of bold_seqspec) |
bold_get_attr |
Get the error messages and parameters used for a request from a bold output. |
bold_get_errors |
Get the error messages and parameters used for a request from a bold output. |
bold_get_params |
Get the error messages and parameters used for a request from a bold output. |
bold_identify |
Search for matches to sequences against the BOLD COI database. |
bold_identify_taxonomy |
Add taxonomic parent names to a data set containing the process IDs of identified sequences. |
bold_identify_taxonomy-method |
Add taxonomic parent names to a data set containing the process IDs of identified sequences. |
bold_read_trace |
Get BOLD trace files |
bold_seq |
Search BOLD for sequences. |
bold_seqspec |
Get BOLD specimen + sequence data. |
bold_specimens |
Search BOLD for specimens. |
bold_stats |
Get BOLD stats |
bold_tax_id2 |
Search BOLD for taxonomy data by BOLD ID. |
bold_tax_name |
Search BOLD for taxonomy data by taxonomic name |
bold_trace |
Get BOLD trace files |
b_sepFasta |
Seperate sequences (fasta) from 'bold_seqspec' output. |
print.boldtrace |
Get BOLD trace files |
read_trace |
Get BOLD trace files |
sequences |
List of 3 nucleotide sequences to use in examples for the 'bold_identify' function |