Interface to Bold Systems API
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Documentation for package ‘bold’ version 1.3.0
Help Pages
| bold-package | bold |
| bold | bold |
| bold_filter | Filter BOLD specimen + sequence data (output of bold_seqspec) |
| bold_get_attr | Get the error messages and parameters used for a request from a bold output. |
| bold_get_errors | Get the error messages and parameters used for a request from a bold output. |
| bold_get_params | Get the error messages and parameters used for a request from a bold output. |
| bold_identify | Search for matches to sequences against the BOLD COI database. |
| bold_identify_taxonomy | Add taxonomic parent names to a data set containing the process IDs of identified sequences. |
| bold_identify_taxonomy-method | Add taxonomic parent names to a data set containing the process IDs of identified sequences. |
| bold_read_trace | Get BOLD trace files |
| bold_seq | Search BOLD for sequences. |
| bold_seqspec | Get BOLD specimen + sequence data. |
| bold_specimens | Search BOLD for specimens. |
| bold_stats | Get BOLD stats |
| bold_tax_id2 | Search BOLD for taxonomy data by BOLD ID. |
| bold_tax_name | Search BOLD for taxonomy data by taxonomic name |
| bold_trace | Get BOLD trace files |
| b_sepFasta | Seperate sequences (fasta) from 'bold_seqspec' output. |
| print.boldtrace | Get BOLD trace files |
| read_trace | Get BOLD trace files |
| sequences | List of 3 nucleotide sequences to use in examples for the 'bold_identify' function |