Interface to Bold Systems API


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Documentation for package ‘bold’ version 1.2.0

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bold-package bold
bold bold
bold_filter Filter BOLD specimen + sequence data (output of bold_seqspec)
bold_identify Search for matches to sequences against the BOLD COI database.
bold_identify_parents Add taxonomic parent names to a data.frame
bold_seq Search BOLD for sequences.
bold_seqspec Get BOLD specimen + sequence data.
bold_specimens Search BOLD for specimens.
bold_stats Get BOLD stats
bold_tax_id Search BOLD for taxonomy data by BOLD ID.
bold_tax_name Search BOLD for taxonomy data by taxonomic name
bold_trace Get BOLD trace files
read_trace Get BOLD trace files
sequences List of 3 nucleotide sequences to use in examples for the 'bold_identify()' function