scaRabee-package |
scaRabee toolkit |
bound.parameters |
Forces parameter estimates between defined boundaries. |
compute.secondary |
Computes secondary parameter values |
convert.infusion |
Process Infusion Information |
create.intervals |
Utility Functions for Ordinary Differential Equation Systems |
dde.lags |
Utility Functions for Delay Differential Equation Systems |
dde.model |
Delay Differential Equations |
dde.syst |
Utility Functions for Delay Differential Equation Systems |
de.output |
Utility Functions for Ordinary Differential Equation Systems |
derived.parms |
Utility Functions for Ordinary Differential Equation Systems |
estimation.plot |
Create Summary Estimation Plots |
example1.data |
Datasets for scaRabee demo. |
example1.initials |
Datasets for scaRabee demo. |
example2.data |
Datasets for scaRabee demo. |
example2.initials |
Datasets for scaRabee demo. |
example3.data |
Datasets for scaRabee demo. |
example3.initials |
Datasets for scaRabee demo. |
example4.data |
Datasets for scaRabee demo. |
example4.initials |
Datasets for scaRabee demo. |
example6.data |
Datasets for scaRabee demo. |
example6.initials |
Datasets for scaRabee demo. |
example8.data |
Datasets for scaRabee demo. |
example8.initials |
Datasets for scaRabee demo. |
explicit.model |
Explicit Equations |
finalize.grid.report |
Finalize Direct Grid Search Report |
finalize.report |
Finalize Estimation Report |
fitmle |
Maximum Likelihood Estimator |
fitmle.cov |
Computation of the Covariance Matrix |
get.cov.matrix |
Computation of the Covariance Matrix |
get.events |
Create events from bolus dosing records. |
get.layout |
Layout for Lattice Functions |
get.parms.data |
Extract data from scaRabee parameter table |
get.secondary |
Computation of Secondary Parameter Estimates |
init.cond |
Utility Functions for Ordinary Differential Equation Systems |
init.update |
Utility Functions for Ordinary Differential Equation Systems |
initialize.report |
Initialize Report Files |
input.scaling |
Utility Functions for Ordinary Differential Equation Systems |
make.dosing |
Utility Functions for Ordinary Differential Equation Systems |
ode.model |
Ordinary Differential Equations |
ode.syst |
Utility Functions for Ordinary Differential Equation Systems |
order.parms.list |
Sort a scaRabee parameter table |
pder |
Compute Matrix of Partial Derivatives |
problem.eval |
Evaluation of structural and residual variability models |
residual.report |
Creation of Prediction & Residual Report |
scaRabee |
scaRabee toolkit |
scarabee.analysis |
Run a scaRabee Analysis |
scarabee.check.model |
Check scaRabee Models |
scarabee.check.reserved |
Check for Reserved Variable Names |
scarabee.clean |
Cleaning of the Run Directory |
scarabee.directory |
Creation of the Run Directory |
scarabee.gridsearch |
Direct Grid Search Utility |
scarabee.new |
Create a scaRabee Analysis Folder |
scarabee.read.data |
Read scaRabee Data File |
scarabee.read.model |
Read scaRabee Model File |
scarabee.read.parms |
Read scaRabee Parameter File |
simulation.plot |
Create Simulation Plots |
simulation.report |
Simulations |
weighting |
Residual Variability |