Extended Batch Marking Models

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Documentation for package ‘extBatchMarking’ version 1.0.1

• DESCRIPTION file.

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batchLL	batchLL function provides the batch marking log-likelihood
batchLogit	batchLogit function
batchMarkHmmLL	Log-likelihood function for marked model.
batchMarkOptim	Marked model only.
batchMarkUnmarkHmmLL	Log-likelihood function for combined model.
batchMarkUnmarkOptim	Combined Marked and Unmarked models.
batchUnmark2Viterbi	batchUnmark2Viterbi function provides a wrapper for the batchUnmarkViterbi to compute the popuation abundance
batchUnmarkHmmLL	batchUnmarkHmmLL function provides the unmarked function to be optimized
batchUnmarkViterbi	batchUnmarkViterbi function provides the implementation of the Viterbi alogrithm for the unmarked model
dbinpois	Convolution of Poisson and Binomial for Batch
delta_g	initial probability function
gamma_gt	Transition State Probability 'gamma_gt' computes the transition probability matrix
probs	State-dependent probability function
WeatherLoach	Weather Loach data