convert_bam_to_rle |
convert_bam_to_rle |
convert_rle_to_df |
convert_rle_to_df |
create_high_nucleotide_content |
create_high_nucleotide_content |
create_mappability_profile |
create_mappability_profile |
example_cov |
Coverage profiles of three plant samples. |
example_diag |
Known diagnostics result of virus segments |
nucleotide_info |
Nucleotide information of virus segments |
plot_cov |
plot_cov() |
predict_iimi |
predict_iimi() |
trained_en |
A trained model using the default Elastic Net settings |
trained_rf |
A trained model using the default Random Forest settings |
trained_xgb |
A trained model using the default XGBoost settings |
train_iimi |
train_iimi() |
unreliable_regions |
The unreliable regions of the virus segments |
virus_segments |
A DNAStringSet of virus segments from the Virtool virus data base (version 1.4.0) |