Identifying Infection with Machine Intelligence
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Documentation for package ‘iimi’ version 1.0.2
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| convert_bam_to_rle | convert_bam_to_rle |
| convert_rle_to_df | convert_rle_to_df |
| create_high_nucleotide_content | create_high_nucleotide_content |
| create_mappability_profile | create_mappability_profile |
| example_cov | Coverage profiles of three plant samples. |
| example_diag | Known diagnostics result of virus segments |
| nucleotide_info | Nucleotide information of virus segments |
| plot_cov | plot_cov() |
| predict_iimi | predict_iimi() |
| trained_en | A trained model using the default Elastic Net settings |
| trained_rf | A trained model using the default Random Forest settings |
| trained_xgb | A trained model using the default XGBoost settings |
| train_iimi | train_iimi() |
| unreliable_regions | The unreliable regions of the virus segments |
| virus_segments | A DNAStringSet of virus segments from the Virtool virus data base (version 1.4.0) |