Access and Analyze eBird Status and Trends Data


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Documentation for package ‘ebirdst’ version 0.3.3

Help Pages

abundance_palette eBird Status and Trends color palettes for mapping
bernoulli_dev Bernoulli deviance
binom_test_p Binomial test for ensemble support
calc_bins Calculates relative abundance bins (breaks) based for mapping
calc_full_extent Calculate the spatial extent of non-zero data in a raster
date_to_st_week Get the Status and Trends week that a date falls into
ebirdst 'ebirdst': Tools to Load, Map, Plot, and Analyze eBird Status and Trends Data Products
ebirdst_download Download eBird Status and Trends Data
ebirdst_extent Construct a spatiotemporal extent object to subset Status and Trends data
ebirdst_extent.bbox Construct a spatiotemporal extent object to subset Status and Trends data
ebirdst_extent.numeric Construct a spatiotemporal extent object to subset Status and Trends data
ebirdst_extent.sf Construct a spatiotemporal extent object to subset Status and Trends data
ebirdst_extent.sfc Construct a spatiotemporal extent object to subset Status and Trends data
ebirdst_habitat eBird Status and Trends predictive habitat associations
ebirdst_ppms eBird Status and Trends predictive performance metrics (PPMs)
ebirdst_ppms_ts Time series of eBird Status and Trends PPMs summarized temporally
ebirdst_predictors eBird Status and Trends predictors
ebirdst_runs Data frame of available eBird Status and Trends species
ebirdst_subset Subset eBird Status and Trends data spatiotemporally
ebirdst_subset.data.frame Subset eBird Status and Trends data spatiotemporally
ebirdst_subset.Raster Subset eBird Status and Trends data spatiotemporally
ebirdst_subset.sf Subset eBird Status and Trends data spatiotemporally
ebirdst_weeks eBird Status and Trends weeks
get_species Get eBird species code for a set of species
get_species_path Get the data package path for a given species
label_raster_stack Label data cubes with the week date for each band
load_config Load eBird Status and Trends configuration file
load_fac_map_parameters Load full annual cycle map parameters
load_pds Load eBird Status and Trends partial dependence data
load_pis Load eBird Status and Trends predictor importance data
load_predictions Load eBird Status and Trends test data predictions
load_raster Load eBird Status and Trends raster data cubes
load_stixels Load summary data for eBird Status and Trends stixels
parse_raster_dates Parse data cube layer names into dates
plot.ebirdst_habitat eBird Status and Trends predictive habitat associations
plot.ebirdst_ppms eBird Status and Trends predictive performance metrics (PPMs)
plot.ebirdst_ppms_ts Time series of eBird Status and Trends PPMs summarized temporally
plot.stixel_footprint Calculate the spatial footprint of a set of stixels
plot_pds Plot partial dependency (PD) line plots
plot_pis Plot predictor importance (PI) box plots
poisson_dev Poisson deviance
project_extent Transform a spatiotemporal extent to a different CRS
sample_case_control Spatiotemporal sampling of points on a grid
sample_grid Spatiotemporal sampling of points on a grid
set_ebirdst_access_key Store the eBird Status and Trends access key
stixelize Generate polygons for eBird Status and Trends stixels
stixel_footprint Calculate the spatial footprint of a set of stixels