Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
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Documentation for package ‘apsimx’ version 2.7.7
Help Pages
A C D E G I M N O P R S T U V W X misc
-- A --
| add_column_apsim_met | Add a column to an object of class 'met' |
| amp_apsim_met | Calculates attribute amp for an object of class 'met' |
| apsim | Run an APSIM (7.x) 'Classic' simulation |
| apsim.options | Environment which stores APSIM options |
| apsimx | Run an APSIM-X simulation |
| apsimx.options | Environment which stores APSIM-X options |
| apsimx_example | Access Example APSIM-X Simulations |
| apsimx_filetype | Test file format for .apsimx files |
| apsimx_options | Setting some options for the package |
| apsimx_soil_profile | Create APSIM-X Soil Profiles |
| apsim_example | Access Example APSIM Simulations |
| apsim_options | Setting some options specific to APSIM (7.x) 'Classic' |
| apsim_version | Display available APSIM 'Classic' and APSIM-X versions |
| as_apsim_met | Conversion from data frame to met object |
| auto_detect_apsimx_examples | Auto detect where apsimx examples are located |
| auto_detect_apsim_examples | Auto detect where apsim examples are located |
| available_water_content | Calculate available water content |
-- C --
| carbon_stocks | Calculate soil carbon stocks |
| check_apsimx_soil_profile | Create APSIM-X Soil Profiles |
| check_apsim_met | Check a met file for possible errors |
| coef.optim_apsim | Optimize parameters in an APSIM simulation |
| compare_apsim | Compare two or more apsim output objects |
| compare_apsim_met | Compare two or more metfiles |
| compare_apsim_soil_profile | Compare two or more soil profiles |
| confint.optim_apsim | Optimize parameters in an APSIM simulation |
-- D --
| date2doy | Converts from doy to date |
| doy2date | Converts from doy to date |
-- E --
| edit_apsim | Edit an APSIM (Classic) Simulation |
| edit_apsimx | Edit an APSIM-X (JSON) Simulation |
| edit_apsimx_batch | Edit an APSIM-X (JSON) Simulation in Batch mode |
| edit_apsimx_replacement | Edit a replacement component in an .apsimx (JSON) file |
| edit_apsimx_replace_soil_profile | Edit APSIM-X file with a replaced soil profile |
| edit_apsim_replace_soil_profile | Edit APSIM 'Classic' file with a replaced soil profile |
| edit_apsim_xml | Edit an APSIM (Classic) Simulation auxiliary xml file |
| extract_data_apsimx | Extract data from an .apsimx (JSON) file |
| extract_values_apsimx | Extract values from a parameter path |
-- G --
| get_apsimx_json | fetches the json file for a specific model from APSIMX github |
| get_chirps_apsim_met | Get CHIRPS data for an APSIM met file |
| get_daymet2_apsim_met | Get DAYMET data for an APSIM met file |
| get_daymet_apsim_met | Get DAYMET data for an APSIM met file |
| get_gsod_apsim_met | Get GSOD data for an APSIM met file |
| get_iemre_apsim_met | Get weather data from Iowa Environmental Mesonet Reanalysis |
| get_iem_apsim_met | Get weather data from Iowa Environmental Ag Weather Stations |
| get_isric_soil_profile | Generate a synthetic APSIM soil profile from the ISRIC soil database |
| get_power_apsim_met | Get NASA-POWER data for an APSIM met file |
| get_ssurgo_soil_profile | Retrieve soil profile data and convert it to an object of class 'soil_profile' |
| get_ssurgo_tables | Retrieve soil profile data and return a (list) with data frames (tables) |
| get_worldmodeler_apsim_met | Obtain a weather APSIM met from the World Modeler database |
| get_worldmodeler_soil_profile | Obtain a synthetic APSIM soil profile from the World Modeler database |
| grep_json_list | grep but for json list |
-- I --
| impute_apsim_met | Perform imputation for missing data in a met file |
| initialwater_parms | Helper function to supply additional Initial Soil Water parameters |
| insert_replacement_node | Inserts a replacement node in a simple apsimx simulation file |
| inspect_apsim | Inspect an .apsim (XML) file |
| inspect_apsimx | Inspect an .apsimx (JSON) file |
| inspect_apsimx_json | Inspect an .apsimx or .json (JSON) file |
| inspect_apsimx_replacement | Inspect a replacement component in an .apsimx (JSON) file |
| inspect_apsim_xml | Inspect an APSIM Classic auxiliary (XML) file |
-- M --
| mcmc.apsim.env | Environment to store data for apsim MCMC |
| mcmc.apsimx.env | Environment to store data for apsimx MCMC |
-- N --
| napad_apsim_met | Pad a met file with NAs when there are date discontinuities |
-- O --
| obsWheat | Observed wheat phenology, LAI and biomass |
| optim_apsim | Optimize parameters in an APSIM simulation |
| optim_apsimx | Optimize parameters in an APSIM Next Generation simulation |
-- P --
| plot.met | Plot method for object of class 'met' |
| plot.met_mrg | Compare two or more metfiles |
| plot.out_mrg | Compare two or more apsim output objects |
| plot.soil_profile | Create APSIM-X Soil Profiles |
| plot.soil_profile_mrg | Compare two or more soil profiles |
| print.met | Printer-friendly version of a metfile |
| print.met_mrg | Compare two or more metfiles |
| print.optim_apsim | Optimize parameters in an APSIM simulation |
| print.out_mrg | Compare two or more apsim output objects |
| print.soil_profile_mrg | Compare two or more soil profiles |
-- R --
| read_apsim | Read APSIM generated .out files |
| read_apsimx | Read APSIM-X generated .db files |
| read_apsimx_all | Read all APSIM-X generated .db files in a directory |
| read_apsim_all | Read all APSIM generated .out files in a directory |
| read_apsim_met | Read in an APSIM met file |
| read_apsim_soils | Read in a soils (XML) file into a list of 'soil_profile' objects |
| remove_column_apsim_met | Add a column to an object of class 'met' |
-- S --
| sens_apsim | Sensitivity Analysis for APSIM Next Generation simulation |
| sens_apsimx | Sensitivity Analysis for APSIM Next Generation simulation |
| soilorganicmatter_parms | Helper function to supply additional Soil Organic Matter parameters |
| soilwat_parms | Helper function to supply SoilWat parameters |
| ssurgo2sp | Take in SSURGO csv files and create a soil profile |
| summary.met | Summary for an APSIM met file |
| summary.sens_apsim | Sensitivity Analysis for APSIM Next Generation simulation |
| swim_parms | Helper function to supply SWIM parameters |
-- T --
| tav_apsim_met | Calculates attribute amp for an object of class 'met' |
| tt_apsim_met | Calculates Thermal Time taking a 'met' object |
-- U --
| unit_conv | performs common unit conversions |
-- V --
| vcov.optim_apsim | Optimize parameters in an APSIM simulation |
| view_apsim | Viewing an APSIM Classic file interactively |
| view_apsimx | Viewing an APSIM-X file interactively |
| view_apsim_xml | View an APSIM Classic auxiliary (XML) file |
-- W --
| wop | Wheat example optimization results |
| wop.h | Wheat example optimization results plus Hessian |
| write_apsim_met | Write an APSIM met file |
-- X --
| xargs_apsimx | Provide extra arguments for APSIM-X |
-- misc --
| $<-.met | Add a column to an object of class 'met' |