Sequence Clustering with Discrete-Output HMMs


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Documentation for package ‘DBHC’ version 0.0.3

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assign.clusters Cluster Assignment
cluster.bic HMM BIC
count.parameters Count HMM Parameters
emission.heatmap Heatmap Emission Probabilities
hmm.clust DBHC Algorithm
model.ll Get HMM Log Likelihood
partition.bic Partition BIC
select.seeds Seed Selection Procedure
seq2hmm.ll Sequence-to-HMM Likelihood
size.search Size Search Algorithm
smooth.hmm Smooth HMM Parameters
smooth.probabilities Smooth Probabilities
transition.heatmap Heatmap Transition Probabilities