Quick and Dirty Estimates for Wildlife Populations

---

Documentation for package ‘wiqid’ version 0.3.3

• DESCRIPTION file.
• Package NEWS.

Help Pages

A B C D G K L M O P Q R S T W

wiqid-package

Fast, simple estimation functions for wildlife population models

-- A --

AICc	Akaike's Information Criterion with small-sample correction - AICc
AICtable	Make a table for AIC or other criterion
allCombinations	Create formulae for all combinations of covariates
as.Bwiqid	Conversion to class Bwiqid (deprecated)
as.Bwiqid.default	Conversion to class Bwiqid (deprecated)

-- B --

Bbinom	Bayesian analysis of binomial data
Bbinomial	Bayesian analysis of binomial data
BetaDist	The Beta Distribution
biodBerger	Biodiversity indices
biodBrillouin	Biodiversity indices
biodShannon	Biodiversity indices
biodSimpson	Biodiversity indices
Bnormal	Bayesian modelling of a normal (Gaussian) distribution
Bnormal2	Bayesian modelling of a normal (Gaussian) distribution
BoccSS	Bayesian single-season occupancy modelling
BoccSS0	Bayesian single-season occupancy modelling
Bpoisson	Bayesian analysis of count data
Bsecr0	Spatially explicit capture-recapture (secr) density estimation using MCMC
BsurvCJS	Survival from recapture data with Cormack-Jolly-Seber (CJS) model
Bwiqid-class	Conversion to class Bwiqid (deprecated)

-- C --

closedCapM0	Analysis of mark-recapture data for closed populations
closedCapMb	Analysis of mark-recapture data for closed populations
closedCapMh2	Analysis of mark-recapture data for closed populations
closedCapMhJK	Analysis of mark-recapture data for closed populations
closedCapMt	Analysis of mark-recapture data for closed populations
closedCapMtcov	Analysis of mark-recapture data for closed populations

-- D --

dbeta2	The Beta Distribution
dbeta3	The Beta Distribution
dgamma2	The Gamma Distribution
dippers	Capture-recapture data for European dippers
Distance Measures	Plug-in distance-measure functions for 'distShell'.
distBrayCurtis	Plug-in distance-measure functions for 'distShell'.
distChaoJaccCorr	Plug-in distance-measure functions for 'distShell'.
distChaoJaccNaive	Plug-in distance-measure functions for 'distShell'.
distChaoSorCorr	Plug-in distance-measure functions for 'distShell'.
distChaoSorNaive	Plug-in distance-measure functions for 'distShell'.
distChord	Plug-in distance-measure functions for 'distShell'.
distJaccard	Plug-in distance-measure functions for 'distShell'.
distMatching	Plug-in distance-measure functions for 'distShell'.
distMorisitaHorn	Plug-in distance-measure functions for 'distShell'.
distOchiai	Plug-in distance-measure functions for 'distShell'.
distPreston	Plug-in distance-measure functions for 'distShell'.
distRogersTanimoto	Plug-in distance-measure functions for 'distShell'.
distShell	Distance Matrix Computation
distSimRatio	Plug-in distance-measure functions for 'distShell'.
distSorensen	Plug-in distance-measure functions for 'distShell'.
distTestData	An artificial data set to test distance/dissimilarity measures
distWhittaker	Plug-in distance-measure functions for 'distShell'.
Diversity indices	Biodiversity indices
dt2	The Generalized Student's t Distribution
dt3	The Generalized Student's t Distribution

-- G --

GammaDist	The Gamma Distribution
getBeta2Par	The Beta Distribution
getBeta3Par	The Beta Distribution
getGammaPar	The Gamma Distribution
getMCerror	MCMC error using the batch method (deprecated)
GrandSkinks	Multi-season detection data for grand skinks

-- K --

KanhaTigers	Capture history matrix for camera-trapped tigers
KillarneyBirds	Abundance of woodland birds

-- L --

Links	Logit and probit links for generalised linear modelling
links	Logit and probit links for generalised linear modelling

-- M --

MeadowVoles

Robust design mark-recapture data for meadow voles

-- O --

occ2sps	Single-season two-species occupancy estimation
occMS	Multi-season occupancy estimation
occMS0	Multi-season occupancy estimation
occMScovSite	Multi-season occupancy estimation
occMStime	Multi-season occupancy estimation
occSS	Single-season occupancy estimation
occSS0	Single-season occupancy estimation
occSScovSite	Single-season occupancy estimation
occSSrn	Royle-Nichols model for single-season occupancy estimation
occSSrn0	Royle-Nichols model for single-season occupancy estimation
occSSrnSite	Royle-Nichols model for single-season occupancy estimation
occSStime	Single-season occupancy estimation

-- P --

pbeta2	The Beta Distribution
pbeta3	The Beta Distribution
pgamma2	The Gamma Distribution
plot.Bwiqid	Plot method for objects of class 'Bwiqid'
plotACs	Plot Activity Centres from 'Bsecr0' output
plotComb	Display a posterior probability distribution from the comb method
plotPost	Deprecated functions in package wiqid
predict.wiqid	Predict method for objects of class 'wiqid'
predictAvg	Predict average values from multiple fitted models
print.Bwiqid	Print and summary methods for objects of class 'Bwiqid'
Priors	Standardisation and priors
pt2	The Generalized Student's t Distribution
pt3	The Generalized Student's t Distribution

-- Q --

qbeta2	The Beta Distribution
qbeta3	The Beta Distribution
qgamma2	The Gamma Distribution
qt2	The Generalized Student's t Distribution
qt3	The Generalized Student's t Distribution

-- R --

railSims	Simulated detection/non-detection data for two species of rails
rbeta2	The Beta Distribution
rbeta3	The Beta Distribution
rgamma2	The Gamma Distribution
richACE	Species richness estimators
richBoot	Species richness estimators
richChao1	Species richness estimators
richChao2	Species richness estimators
richCurve	Species richness estimates based on accumulation curves
richDouble	Species richness estimates based on accumulation curves
richDuplicate	Species richness estimates based on accumulation curves
richICE	Species richness estimators
richJack1	Species richness estimators
richJack2	Species richness estimators
richJackA1	Species richness estimators
richJackA2	Species richness estimators
richMM	Species richness estimators
richRarefy	Sample-based rarefaction curves
richRenLau	Species richness estimators
richSingle	Species richness estimates based on accumulation curves
richSobs	Species richness estimates based on accumulation curves
richUnique	Species richness estimates based on accumulation curves
rt2	The Generalized Student's t Distribution
rt3	The Generalized Student's t Distribution

-- S --

salamanders	Occupancy data for blue ridge salamanders
secrFit	Spatially Explicit Capture-Recapture
seedbank	Seed abundances in soil samples
showShinyApp	Display a 'shiny' application
simpleRhat	The Brooks-Gelman-Rubin (BGR) convergence diagnostic (deprecated)
Species richness estimators	Species richness estimators
Standardisation	Standardisation and priors
Standardization	Standardisation and priors
standardize	Scaling and centring of vectors, matrices and arrays
standardize2match	Scaling and centring of vectors, matrices and arrays
summary.Bwiqid	Print and summary methods for objects of class 'Bwiqid'
survCJS	Survival from recapture data with Cormack-Jolly-Seber (CJS) model
survCJSaj	Survival from recapture data with Cormack-Jolly-Seber (CJS) model
survRD	Survival from mark-recapture data with robust design
survRDah	Survival from mark-recapture data with robust design

-- T --

TDist	The Generalized Student's t Distribution
Temburong	Tree species count data
TemburongBA	Tree species count data
toves	Simulated detection/non-detection data for a fictitious species

-- W --

WAIC	Extract the Watanabe-Akaike Information Criterion (WAIC)
weta	Detection data for weta in gorse bushes
wiqid	Fast, simple estimation functions for wildlife population models
wiqid-class	The 'wiqid' S3 class