concat_conserved_kmer |
k-mer sequences concatenation |
extract_from_GISAID |
Extract metadata via fasta file from GISAID |
extract_from_NCBI |
Extract metadata via fasta file from ncbi |
json2csv |
JSON2CSV |
JSON_sample |
DiMA (v4.1.1) JSON Output File |
metadata |
Metadata Input Sample |
metadata_extraction |
Metadata Extraction from NCBI/GISAID EpiCoV FASTA file |
plot_conservationLevel |
Conservation Levels Distribution Plot |
plot_correlation |
Entropy and total variant incidence correlation plot |
plot_dynamics_protein |
Dynamics of Diversity Motifs (Protein) Plot |
plot_dynamics_proteome |
Dynamics of Diversity Motifs (Proteome) Plot |
plot_entropy |
Entropy plot |
plot_time |
Time Distribution of Sequences Plot |
plot_worldmap |
Geographical Distribution of Sequences Plot |
proteins_1host |
DiMA (v4.1.1) JSON converted-CSV Output Sample 1 |
protein_2hosts |
DiMA (v4.1.1) JSON converted-CSV Output Sample 2 |