Isotope Origin Clustering and Assignment Tools

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Documentation for package ‘isocat’ version 0.3.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

clusterSimmatrix	Hierarchical clustering analysis of similarity matrix
cumsumAtSamplingLocation	Cumulative sum at coordinates
cumsumbelow	Cumulative sum below value
cumsum_at_point	Cumulative sum at coordinates
cumsum_surface	Create cumulative sum probability surface
getPrecisionPar	Calculate model precision at given threshold values (in parallel).
isoscape	Example isoscape data
isoscape_sd	Example isoscape standard deviation data
isotopeAssignmentModel	Isotope assignment model function
makecumsumSurface	Create cumulative sum probability surface
makeMultiMonthIsoscape	Make mean multi-month isoscape and error surfaces.
makeOddsSurfaces	Convert probability surface to odds-ratio surface
makeQuantileSimulationSurface	Create quantile-simulation surfaces
makeQuantileSurfaces	Convert probability surface to probability-quantile surface
meanAggregateClusterProbability	Create mean aggregate probability-of-origin surfaces for each cluster.
oddsAtSamplingLocation	Odds ratio at coordinates function
odds_at_point	Odds ratio at coordinates function
odds_surface	Convert probability surface to odds-ratio surface
projectSummaryMaxSurface	Project probability-of-origin surfaces into one summary surface.
quantileAtSamplingLocation	Quantile at coordinates function
quantile_at_point	Quantile at coordinates function
quantile_surface	Convert probability surface to probability-quantile surface
schoenersD	Calculates Schoener's D-value between two RasterLayers.
simmatrixMaker	Generates similarity matrix for RasterStack