Reconstruct Animal Paths from Solar Geolocation Loggers Data

Documentation for package ‘FLightR’ version 0.5.5

BAStag2TAGS	Function to write down twilights annotated in BAStag package data in so-called TAGS format
find.stationary.location	find unknown calibration location
find.times.distribution	extracts times of arrival and departure to/from spatial extent
FLightR2Movebank	Summary of estimated locations for Movebank
GeoLight2TAGS	Function to write down twilights annotated in GeoLight package data in so-called TAGS format
get.tags.data	read TAGS formatted data
get_ZI_distances	Estimate distances moved between twilights
make.calibration	Creates a calibration object, further used for calculation of coordinates in the 'run.particle.filter'.
make.grid	makes spatial grid
make.prerun.object	combines data, calibration and sets up priors
map.FLightR.ggmap	plots result over map
plot_likelihood	plot likelihood surface over map
plot_lon_lat	plots result by longitude and latitude
plot_slopes_by_location	plots log of observed versus expected slope by time for a known location
plot_util_distr	plots resulting track over map with uncertainty shown by space utilisation distribution
run.particle.filter	Run Particle Filter
stationary.migration.summary	find potential stationary periods and estimates their location and movement schedule
twGeos2TAGS	Function to write down twilights annotated in twGeos package data in so-called TAGS format