QCGWAS-package |
Quality Control of Genome Wide Association Study Results |
calc_kurtosis |
Skewness and Kurtosis |
calc_skewness |
Skewness and Kurtosis |
check_P |
Checking GWAS p-values |
convert_impstatus |
Convert imputation-status values to the QCGWAS standard |
create_hapmap_reference |
Create an allele-reference file from HapMap data |
filter_GWAS |
Automated filtering and reformatting of GWAS results files |
gwa_sample |
Sample dataset for the QCGWAS package |
header_translations |
Translation table for GWAS dataset headers |
histogram_series |
Histogram(s) of expected and observed data distribution |
HQ_filter |
Select high-quality data in GWAS datasets |
identify_column |
Identify non-standard column names |
intensity_plot |
Generates an intensity plot from x, y datasets |
load_GWAS |
Easy loading of GWAS results files |
load_test |
Easy loading of GWAS results files |
match_alleles |
Check and correct alleles in GWAS result files |
plot_distribution |
GWAS effect-Size distribution plot |
plot_precision |
GWAS Precision Plot |
plot_regional |
Regional Association Plot |
plot_skewness |
GWAS Skewness vs. Kurtosis Plot |
QCGWAS |
Quality Control of Genome Wide Association Study Results |
QC_GWAS |
Automated Quality Control of GWAS Results files |
QC_histogram |
Histogram(s) of expected and observed data distribution |
QC_plots |
QQ and Manhattan plots |
QC_series |
Automated Quality Control of GWAS Results files |
QQ_plot |
QQ plot(s) of expected vs. reported p-values |
QQ_series |
QQ plot(s) of expected vs. reported p-values |
save_log |
Log entries for QC_GWAS |
switch_strand |
Convert alleles to the opposing DNA strand |
translate_header |
Translate column names into standard names |