Post-Translational Modification Enrichment, Integration, and Matching Analysis

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Documentation for package ‘PEIMAN2’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

exmplData1	Example dataset1
exmplData2	Example dataset 2
getTaxonomyName	Return the exact taxonomy name for list of protein
mod_ont	Database of protein modifications
plotEnrichment	Plot and match singular enrichment results
plotPSEA	Plot the results of protein set enrichment analysis (PSEA)
plotRunningScore	Plot running score plot for the results of psea
psea2mass	Translate PSEA results for Mass Spectrometry searching tools
ptmlist	Controlled vocabulary for post-translational modifications (PTM) terms
runEnrichment	Run singular enrichment analysis (SEA) for a given list of protein
runPSEA	Run Protein Set Enrichment Analysis (PSEA)
sea2mass	Translate SEA results for Mass Spectrometry searching tools