Hierarchical Modelling of Faecal Egg Counts

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Documentation for package ‘eggCounts’ version 2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Code demos. Use demo() to run them.
• Package NEWS.

Help Pages

eggCounts-package	Hierarchical modelling of faecal egg counts
epgs	Faecal egg count samples (before and after treatment)
fecrtCI	Compute standard FECRT according to WAAVP guidelines
fecr_probs	Compute probability of the reduction parameter relative to a given threshold
fecr_stan	Model the reduction of faecal egg count
fecr_stanExtra	Model the reduction of faecal egg count using custom models
fecr_stanSimple	Model the reduction of faecal egg count using a simple Bayesian model
fec_stan	Modelling of faecal egg count data (one-sample case)
getPrior_delta	Get prior parameters from Beta distribution
getPrior_mu	Get prior parameters from Gamma distribution
plotCounts	Plot faecal egg count data
simData1s	Simulate faecal egg count data (1-sample situation)
simData2s	Simulate faecal egg count data (2-sample situation)
stan2mcmc	Convert a Stanfit object to a MCMC object