Hierarchical Modelling of Faecal Egg Counts


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Documentation for package ‘eggCounts’ version 2.3

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eggCounts-package Hierarchical modelling of faecal egg counts
epgs Faecal egg count samples (before and after treatment)
fecrtCI Compute standard FECRT according to WAAVP guidelines
fecr_probs Compute probability of the reduction parameter relative to a given threshold
fecr_stan Model the reduction of faecal egg count
fecr_stanExtra Model the reduction of faecal egg count using custom models
fecr_stanSimple Model the reduction of faecal egg count using a simple Bayesian model
fec_stan Modelling of faecal egg count data (one-sample case)
getPrior_delta Get prior parameters from Beta distribution
getPrior_mu Get prior parameters from Gamma distribution
plotCounts Plot faecal egg count data
simData1s Simulate faecal egg count data (1-sample situation)
simData2s Simulate faecal egg count data (2-sample situation)
stan2mcmc Convert a Stanfit object to a MCMC object