Inferring the Topology of Omics Data
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Documentation for package ‘iTOP’ version 1.0.2
Help Pages
| bootstrap.config.matrices | Performing a single bootstrap |
| compute.config.matrices | Compute configuration matrices |
| compute.config.matrix | Computes a configuration matrix |
| inner.product | Inner product similarity. |
| intersect.samples | Intersect samples between datasets. |
| jaccard | Jaccard similarity. |
| permute.config.matrices | Performing a permutation |
| process.custom.config.matrix | Process a custom configuration matrix. |
| run.bootstraps | Bootstrapping procedure |
| run.permutations | Permutations for significance testing |
| rv.coef | Computes the RV coefficient |
| rv.conf.interval | Determining a confidence interval for the (partial) RV coefficient |
| rv.cor.matrix | A correlation matrix of RV coefficients |
| rv.link.significance | Wrapper function to determine significance in the PC algorithm |
| rv.pcor | Determining a (partial) RV coefficient |
| rv.pval | Determining a p-value the (partial) RV coefficient |