Gene-Ranking Analysis of Pathway Expression
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Documentation for package ‘GRAPE’ version 0.1.1
Help Pages
| getPathwayScores | Calculate Pathway Scores |
| makeBinaryTemplateAndProbabilityTemplate | Make binary template and probability template |
| makeGRAPE_psMat | Calculate Pathway Space Matrix |
| makePairwiseOrder | Make pairwise order representation of a sample |
| makePairwiseOrderNames | Make template names from gene names |
| predictClassDIRAC | DIRAC Classification |
| predictClassGRAPE | GRAPE Classification |
| predictClassPC | PC Classification |
| w_quad | Quadratic weight function |