Latent Effect Adjustment After Primary Projection

Documentation for package ‘leapp’ version 1.3

leapp-package	latent effect adjustment after primary projection
AlternateSVD	Alternating singular value decomposition
FindAUC	Compute the area under the ROC curve (AUC)
FindFpr	Compute the false positive rate at given sizes of retrieved genes
FindPrec	compute the precision at given sizes of retrieved genes
FindRec	compute the recall at given sizes of retrieved genes
FindTpr	compute the true positive rate at given sizes of retrieved genes
IPOD	Iterative penalized outlier detection algorithm
IPODFUN	compute the iterative penalized outlier detection given the noise standard deviation sigma
leapp	latent effect adjustment after primary projection
Pvalue	Calculate statistics and p-values
ridge	Outlier detection with a ridge penalty
ROCplot	plot ROC curve
simdat	Simulated gene expression data affected by a group variable and an unobserved factor