Gene Set Analysis with QTL


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Documentation for package ‘GSAQ’ version 1.0

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genedist Chromosomal distribution of the genes in the selected geneset
genelist A list of genes of rice
geneqtl List of the selected genes along with their corresponding overlapped QTL
GeneSelect Selection of informative geneset
GSAQ Gene Set Analysis with Quantitative Trait Loci with gene sampling model
GSVQ Gene Set Validation with QTL using Hyper-geometric test without gene sampling model
qtldist QTL wise distribution of genes in the selected geneset
qtlhit Computation of qtl-hit statistic for the selected gene set
qtl_salt A list of salt responsive Quantitative Trait Loci of rice
rice_salt Gene expression data of rice under salinity stress
totqtlhit Computation of total number of qtl-hits found in the whole gene space