microclass-package |
Methods for 16S based taxonomic classification of prokaryotes |
blastClassify16S |
Classifying using BLAST |
blastDbase16S |
Building a BLAST database |
KmerCount |
K-mer counting |
microclass |
Methods for 16S based taxonomic classification of prokaryotes |
multinomClassify |
Classifying with a Multinomial model |
multinomTrain |
Training multinomial model |
rdpClassify |
Classifying with the RDP classifier |
rdpTrain |
Training the RDP classifier |
setParallel |
Set number of parallel threads |
small.16S |
A small example data set |
taxMachine |
Classifying 16S sequences |