Methods for Taxonomic Classification of Prokaryotes

---

Documentation for package ‘microclass’ version 1.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

microclass-package	Methods for 16S based taxonomic classification of prokaryotes
blastClassify16S	Classifying using BLAST
blastDbase16S	Building a BLAST database
KmerCount	K-mer counting
microclass	Methods for 16S based taxonomic classification of prokaryotes
multinomClassify	Classifying with a Multinomial model
multinomTrain	Training multinomial model
rdpClassify	Classifying with the RDP classifier
rdpTrain	Training the RDP classifier
setParallel	Set number of parallel threads
small.16S	A small example data set
taxMachine	Classifying 16S sequences