create_protein_list |
Creating a list of matrices of fragment ion intensities for all proteins |
create_protein_table |
Protein quantification for a list of proteins |
extract_annotation |
Protein annotation extraction |
fast_MaxLFQ |
The MaxLFQ algorithm |
fast_preprocess |
Data filtering and normalization |
fast_read |
Reading data from an input file |
maxLFQ |
The MaxLFQ algorithm for protein quantification |
meanInt |
The meanInt algorithm for protein quantification |
median_polish |
A wrapper for the R implementation of the median polish algorithm |
plot_protein |
Plotting the underlying quantitative data for a protein |
preprocess |
Data preprocessing for protein quantification |
process_long_format |
Long format to a wide format table using the MaxLFQ algorithm |
process_wide_format |
Merging rows with identical values in a particular column in a table |
spikeins |
An example dataset of 12 spike-in proteins |
topN |
The topN algorithm for protein quantification |