Hierarchical Optimal Matching and Machine Learning Toolbox

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Documentation for package ‘hamlet’ version 0.9.6

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hamlet-package Hierarchical Optimal Matching and Machine Learning Toolbox
extendsymrange Extend range of variable limits while retaining a point of symmetricity
hamlet Hierarchical Optimal Matching and Machine Learning Toolbox
hmap Plot-region based heatmap
hmap.annotate Add a row and column annotations to a plot-region based heatmap built with 'hmap'
hmap.key Add a color key to a plot-region based heatmap built with 'hmap'
match.allocate Allocation of matched units to intervention arms
match.bb Branch and Bound algorithm implementation for performing multigroup non-bipartite matching
match.dummy Create dummy individuals or sinks to a data matrix or a distance/dissimilarity matrix
match.ga Non-bipartite matching using the Genetic Algorithm (GA)
match.mat2vec Transform a binary matching matrix to a matching vector
match.vec2mat Transform a matching vector to a binary matching matrix
mem.getcomp Extract per-observation components for fixed and random effects of a mixed-effects model
mem.plotran Plot random effects histograms for a fitted mixed-effects model
mem.plotresid Plot residuals of a mixed-effects model along with trend lines
mem.powersimu Power simulations for the fixed effects of a mixed-effects model through structured bootstrapping of the data and re-fitting of the model
mix.binary Binary coding of categorical variables
mix.fun Apply function to numerical columns of a mixed data.frame while ignoring non-numeric fields
mixplot Scatterplot for mixed type data
orxlong Long-format longitudinal data for the ORX study
orxwide Wide-format baseline data for the ORX study
smartjitter Smart jittering function for deterministic shifting of overlapping values
vcaplong Long-format data of the Castration-resistant Prostate Cancer experiment using the VCaP cell line.
vcapwide Wide-format data of the Castration-resistant Prostate Cancer experiment using the VCaP cell line.